Merge pull request #14 from atusa17/PAN-7

Pan 7
2019-02-24 16:37:42 -07:00
parent b142de57d5 bb28de709a
commit 92aebf0283
50 changed files with 869 additions and 201 deletions
@@ -19,7 +19,7 @@ before_install:
 before_script:
  - mysql_upgrade --force -uroot
  - mysql -u root -e 'CREATE DATABASE IF NOT EXISTS pandamonium;'
-  - mysql -u root -e "CREATE USER 'panda'@'localhost';"
+  - mysql -u root -e "CREATE USER 'panda'@'localhost' IDENTIFIED BY 'secret';"
  - mysql -u root -e "GRANT ALL PRIVILEGES ON *.* to 'panda'@'localhost';"
  - mysql -u root pandamonium < persistence/scripts/mysql/local_development.sql

@@ -55,12 +55,13 @@ subprojects {
        compile 'org.slf4j:slf4j-api:1.7.21'
        compile "joda-time:joda-time:2.2"
        compile('org.springframework:spring-context:5.0.9.RELEASE')
-        
+
+        compileOnly 'org.projectlombok:lombok:1.18.4'
+
        testCompile group: 'junit', name: 'junit', version: '4.11'
        testCompile group: 'junit', name: 'junit', version: '4.12'
        testCompile('org.mockito:mockito-core:1.10.19') {exclude(group: 'org.hamcrest')}

-        compileOnly 'org.projectlombok:lombok:1.18.4'
    }

    test {
@@ -94,11 +95,10 @@ dependencies {
    compile 'org.codehaus.groovy:groovy-all:2.3.11'
    compile 'org.apache.commons:commons-lang3:3.5'
    // The production code uses the SLF4J logging API at compile time
-    compile 'org.slf4j:slf4j-api:1.7.21'
+    compile 'org.slf4j:slf4j-api:1.7.22'
    compile "joda-time:joda-time:2.2"
-    compile("org.springframework.boot:spring-boot-starter-web")
-    
-    testCompile group: 'junit', name: 'junit', version: '4.11'
+    compile group: 'org.springframework.boot', name: 'spring-boot-starter-web', version: '2.0.5.RELEASE'
+
    testCompile group: 'junit', name: 'junit', version: '4.12'
    testCompile "org.springframework:spring-test:5.0.9.RELEASE"
    testCompile('org.mockito:mockito-core:1.10.19') {exclude(group: 'org.hamcrest')}
@@ -129,6 +129,6 @@ compileTestKotlin {
 }

 wrapper {
-    gradleVersion = '4.10.2'
+    gradleVersion = '5.2.1'
    distributionType = Wrapper.DistributionType.ALL
 }
@@ -1,5 +1,4 @@
-import org.gradle.internal.os.OperatingSystem;
-
+import org.gradle.internal.os.OperatingSystem
 plugins {
    id 'java'
 }
@@ -10,23 +9,36 @@ version '1.0'

 sourceCompatibility = 1.8

+sonarqube {
+    properties {
+        property "sonar.projectName", 'Pandamonium Persistence Tier'
+    }
+}
+
 repositories {
    mavenCentral()
 }

 dependencies {
-    testCompile group: 'junit', name: 'junit', version: '4.12'
+    compile group: 'org.springframework.data', name: 'spring-data-jpa', version: '2.0.5.RELEASE'
+    compile group: 'org.apache.tomcat', name: 'tomcat-jdbc', version: '9.0.16'
+    compile group: 'org.springframework.boot', name: 'spring-boot-devtools', version: '2.0.5.RELEASE'
+    compile group: 'org.springframework.boot', name: 'spring-boot-starter-web', version: '2.0.5.RELEASE'
+    compile group: 'org.springframework', name: 'spring-aspects', version: '5.1.5.RELEASE'
+    compile group: 'org.hibernate', name: 'hibernate-core', version: '5.4.1.Final'
+    compile group: 'com.vladmihalcea', name: 'hibernate-types-52', version: '2.4.1'
+
    compile fileTree(dir: 'lib', include: '**/*.jar')
-    
-    compile 'com.mchange:c3p0:0.9.5.2'
-    compile 'mysql:mysql-connector-java:5.1.35'
-    compile 'org.hibernate:hibernate-validator:5.3.4.Final'
-    compile 'javax.validation:validation-api:1.1.0.Final'
+
+    compile group: 'mysql', name: 'mysql-connector-java', version: '8.0.15'
    compile('com.googlecode.log4jdbc:log4jdbc:1.2') {
        exclude(group: 'org.slf4j')
    }

+    testCompile group: 'org.springframework.boot', name: 'spring-boot-starter-test', version: '2.1.2.RELEASE'
+    testCompile group: 'junit', name: 'junit', version: '4.12'
    testCompile 'javax.el:javax.el-api:3.0.0'
+
 }

 task loadDb(type: Exec, group: 'Verification', description: 'Reloads the local database.') {
@@ -35,6 +47,6 @@ task loadDb(type: Exec, group: 'Verification', description: 'Reloads the local d
        commandLine './loaddb.sh'
    } else {
        workingDir "./scripts/mysql"
-        commandLine 'loaddb.bat'
+        commandLine=['cmd','/c','loaddb.bat']
    }
 }
@@ -1,5 +1,5 @@
-SET MYSQL_PWD=secret
-FOR /R %%s IN (.\*.sql) do (
+set mysql_pwd = secret
+FOR /R %%s IN (*.sql) do (
    echo **** %%s ****
-    echo mysql --batch --quick --raw --line-numbers --force --user=panda < %%s
+    mysql -u panda -psecret < %%s
 )
@@ -1,8 +1,7 @@
 #!/usr/bin/env bash
-export MYSQL_PWD=secret

 for sqlScript in $( find . -name "*.sql" -print | sort);
   do
      echo "**** $sqlScript ****"
-      mysql --batch --quick --raw --line-numbers --force --user=panda < $sqlScript
+      mysql -u panda -psecret < $sqlScript
   done
@@ -0,0 +1,74 @@
+package edu.msudenver.tsp.persistence;
+
+import edu.msudenver.tsp.persistence.dto.Definition;
+import edu.msudenver.tsp.persistence.dto.DefinitionDto;
+import edu.msudenver.tsp.persistence.dto.Notation;
+import edu.msudenver.tsp.persistence.repository.DefinitionRepository;
+import org.junit.Test;
+import org.junit.runner.RunWith;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.test.context.ContextConfiguration;
+import org.springframework.test.context.junit4.SpringJUnit4ClassRunner;
+
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Optional;
+
+import static org.junit.Assert.*;
+
+@RunWith(SpringJUnit4ClassRunner.class)
+@ContextConfiguration(classes = PersistenceTestConfig.class)
+public class DefinitionsIntegrationTest {
+    @Autowired private DefinitionRepository definitionRepository;
+
+    @Test
+    public void testCRUDFunctionality() {
+        // Create a new definition
+        final DefinitionDto definitionDto = createDefinition();
+        final DefinitionDto savedDefinition = definitionRepository.save(definitionDto);
+
+        assertNotNull(savedDefinition);
+        assertEquals(Integer.valueOf(0), savedDefinition.getVersion());
+
+        final int id = savedDefinition.getId();
+
+        assertEquals("Test Name", savedDefinition.getName());
+        assertNotNull(savedDefinition.getDefinition());
+        assertNotNull(savedDefinition.getNotation());
+
+        final List<String> definitionsList = savedDefinition.getDefinition().getDefinitions();
+        final List<String> notationList = savedDefinition.getNotation().getNotations();
+
+        assertEquals(2, definitionsList.size());
+        assertEquals(1, notationList.size());
+        assertEquals("Test definition 1", definitionsList.get(0));
+        assertEquals("Test definition 2", definitionsList.get(1));
+        assertEquals("\\testLaTeX", notationList.get(0));
+
+        definitionRepository.delete(savedDefinition);
+        final Optional<DefinitionDto> deletedDefinition = definitionRepository.findById(id);
+        assertFalse(deletedDefinition.isPresent());
+    }
+
+    private DefinitionDto createDefinition() {
+        final List<String> definitionList = new ArrayList<>();
+        definitionList.add("Test definition 1");
+        definitionList.add("Test definition 2");
+
+        final Definition definition = new Definition();
+        definition.setDefinitions(definitionList);
+
+        final List<String> notationList = new ArrayList<>();
+        notationList.add("\\testLaTeX");
+
+        final Notation notation = new Notation();
+        notation.setNotations(notationList);
+
+        final DefinitionDto definitionDto = new DefinitionDto();
+        definitionDto.setName("Test Name");
+        definitionDto.setDefinition(definition);
+        definitionDto.setNotation(notation);
+
+        return definitionDto;
+    }
+}
@@ -0,0 +1,93 @@
+package edu.msudenver.tsp.persistence;
+
+import org.hibernate.SessionFactory;
+import org.hibernate.jpa.HibernatePersistenceProvider;
+import org.springframework.boot.autoconfigure.domain.EntityScan;
+import org.springframework.boot.jdbc.DataSourceBuilder;
+import org.springframework.context.annotation.Bean;
+import org.springframework.context.annotation.Configuration;
+import org.springframework.context.annotation.Primary;
+import org.springframework.data.jpa.repository.config.EnableJpaAuditing;
+import org.springframework.data.jpa.repository.config.EnableJpaRepositories;
+import org.springframework.jdbc.datasource.init.DataSourceInitializer;
+import org.springframework.orm.hibernate5.HibernateTransactionManager;
+import org.springframework.orm.hibernate5.LocalSessionFactoryBuilder;
+import org.springframework.orm.jpa.JpaTransactionManager;
+import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
+import org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter;
+
+import javax.sql.DataSource;
+import java.util.Properties;
+
+@Configuration
+@EnableJpaRepositories
+@EnableJpaAuditing
+@EntityScan(basePackages = "edu.msudenver.tsp.persistence")
+public class PersistenceTestConfig {
+    @Bean
+    @Primary
+    public LocalContainerEntityManagerFactoryBean entityManagerFactory() {
+        final LocalContainerEntityManagerFactoryBean entityManagerFactoryBean = new LocalContainerEntityManagerFactoryBean();
+        entityManagerFactoryBean.setJpaVendorAdapter(vendorAdapter());
+        entityManagerFactoryBean.setDataSource(getDataSource());
+        entityManagerFactoryBean.setPersistenceProviderClass(HibernatePersistenceProvider.class);
+        entityManagerFactoryBean.setPackagesToScan("edu.msudenver.tsp.persistence");
+        entityManagerFactoryBean.setJpaProperties(additionalProperties());
+
+        return entityManagerFactoryBean;
+    }
+
+    @Bean
+    public JpaTransactionManager jpaTransactionManager() {
+        final JpaTransactionManager jpaTransactionManager = new JpaTransactionManager();
+        jpaTransactionManager.setEntityManagerFactory(entityManagerFactory().getObject());
+        return jpaTransactionManager;
+    }
+
+    private HibernateJpaVendorAdapter vendorAdapter() {
+        final HibernateJpaVendorAdapter vendorAdapter = new HibernateJpaVendorAdapter();
+        vendorAdapter.setShowSql(true);
+        return vendorAdapter;
+    }
+
+    @Bean(name = "dataSource")
+    public DataSource getDataSource(){
+        return DataSourceBuilder
+                .create()
+                .username("panda")
+                .password("secret")
+                .url("jdbc:mysql://127.0.0.1:3306/pandamonium?autoReconnect=true&useSSL=false")
+                .driverClassName("com.mysql.cj.jdbc.Driver")
+                .build();
+    }
+
+    @Bean(name = "sessionFactory")
+    public SessionFactory getSessionFactory(final DataSource dataSource) {
+        final LocalSessionFactoryBuilder sessionFactoryBuilder = new LocalSessionFactoryBuilder(dataSource);
+        sessionFactoryBuilder.scanPackages("edu.msudenver.tsp.persistence.dto");
+        return sessionFactoryBuilder.buildSessionFactory();
+    }
+
+    @Bean(name = "transactionManager")
+    public HibernateTransactionManager getTransactionManager(final SessionFactory sessionFactory) {
+        return new HibernateTransactionManager(sessionFactory);
+    }
+
+    @Bean
+    public DataSourceInitializer dataSourceInitializer(final DataSource dataSource) {
+        final DataSourceInitializer initializer = new DataSourceInitializer();
+        initializer.setDataSource(dataSource);
+        return initializer;
+    }
+
+    private Properties additionalProperties() {
+        final Properties properties = new Properties();
+        properties.setProperty("hibernate.hbm2ddl.auto", "update");
+        properties.setProperty("hibernate.dialect", "org.hibernate.dialect.MySQL8Dialect");
+        properties.setProperty("spring.jpa.show-sql", "true");
+        properties.setProperty("spring.datasource.tomcat.max-active", "1");
+        properties.setProperty("hibernate.id.new_generator_mappings","false");
+
+        return properties;
+    }
+}
@@ -0,0 +1,109 @@
+package edu.msudenver.tsp.persistence;
+
+import org.hibernate.SessionFactory;
+import org.hibernate.jpa.HibernatePersistenceProvider;
+import org.springframework.beans.factory.annotation.Value;
+import org.springframework.boot.SpringApplication;
+import org.springframework.boot.autoconfigure.SpringBootApplication;
+import org.springframework.boot.autoconfigure.domain.EntityScan;
+import org.springframework.boot.jdbc.DataSourceBuilder;
+import org.springframework.context.annotation.Bean;
+import org.springframework.context.annotation.Primary;
+import org.springframework.data.jpa.repository.config.EnableJpaAuditing;
+import org.springframework.data.jpa.repository.config.EnableJpaRepositories;
+import org.springframework.jdbc.datasource.init.DataSourceInitializer;
+import org.springframework.orm.hibernate5.HibernateTransactionManager;
+import org.springframework.orm.hibernate5.LocalSessionFactoryBuilder;
+import org.springframework.orm.jpa.JpaTransactionManager;
+import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
+import org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter;
+
+import javax.sql.DataSource;
+import java.util.Properties;
+
+@SpringBootApplication
+@EnableJpaRepositories
+@EnableJpaAuditing
+@EntityScan
+public class PersistenceApi {
+
+    @Value("${spring.datasource.username}") private String username;
+    @Value("${spring.datasource.password}") private String password;
+    @Value("${spring.jpa.hibernate.ddl-auto}") private String hibernateTablePolicy;
+    @Value("${spring.datasource.url}") private String databaseUrl;
+    @Value("${spring.jpa.properties.hibernate.dialect}") private String hibernateDialect;
+    @Value("${spring.jpa.show-sql}") private String showSql;
+    @Value("${spring.datasource.driver-class-name}") private String driverClassName;
+    @Value("${spring.datasource.tomcat.max-active}") private String tomcatPoolMaxActive;
+
+    public static void main(final String[] args) {
+        SpringApplication.run(PersistenceApi.class, args);
+    }
+
+    @Bean
+    @Primary
+    public LocalContainerEntityManagerFactoryBean entityManagerFactory() {
+        final LocalContainerEntityManagerFactoryBean em = new LocalContainerEntityManagerFactoryBean();
+        em.setJpaVendorAdapter(vendorAdapter());
+        em.setDataSource(getDataSource());
+        em.setPersistenceProviderClass(HibernatePersistenceProvider.class);
+        em.setPackagesToScan("edu.msudenver.tsp.persistence");
+        em.setJpaProperties(additionalProperties());
+
+        return em;
+    }
+
+    @Bean
+    public JpaTransactionManager jpaTransactionManager() {
+        final JpaTransactionManager jpaTransactionManager = new JpaTransactionManager();
+        jpaTransactionManager.setEntityManagerFactory(entityManagerFactory().getObject());
+        return jpaTransactionManager;
+    }
+
+    private HibernateJpaVendorAdapter vendorAdapter() {
+        final HibernateJpaVendorAdapter vendorAdapter = new HibernateJpaVendorAdapter();
+        vendorAdapter.setShowSql(true);
+        return vendorAdapter;
+    }
+
+    @Bean(name = "dataSource")
+    public DataSource getDataSource(){
+        return DataSourceBuilder
+                .create()
+                .username(username)
+                .password(password)
+                .url(databaseUrl)
+                .driverClassName(driverClassName)
+                .build();
+    }
+
+    @Bean(name = "sessionFactory")
+    public SessionFactory getSessionFactory(final DataSource dataSource) {
+        final LocalSessionFactoryBuilder sessionFactoryBuilder = new LocalSessionFactoryBuilder(dataSource);
+        sessionFactoryBuilder.scanPackages("edu.msudenver.tsp.persistence.dto");
+        return sessionFactoryBuilder.buildSessionFactory();
+    }
+
+    @Bean(name = "transactionManager")
+    public HibernateTransactionManager getTransactionManager(final SessionFactory sessionFactory) {
+        return new HibernateTransactionManager(sessionFactory);
+    }
+
+    @Bean
+    public DataSourceInitializer dataSourceInitializer(final DataSource dataSource) {
+        final DataSourceInitializer initializer = new DataSourceInitializer();
+        initializer.setDataSource(dataSource);
+        return initializer;
+    }
+
+    Properties additionalProperties() {
+        final Properties properties = new Properties();
+        properties.setProperty("hibernate.hbm2ddl.auto", "update");
+        properties.setProperty("hibernate.dialect", hibernateDialect);
+        properties.setProperty("spring.jpa.show-sql", showSql);
+        properties.setProperty("spring.datasource.tomcat.max-active", tomcatPoolMaxActive);
+        properties.setProperty("hibernate.id.new_generator_mappings","false");
+
+        return properties;
+    }
+}
@@ -1,10 +0,0 @@
-package edu.msudenver.tsp.persistence;
-
-import org.springframework.context.annotation.ComponentScan;
-import org.springframework.context.annotation.Configuration;
-
-@Configuration
-@ComponentScan
-public class PersistenceConfig {
-
-}
@@ -0,0 +1,26 @@
+package edu.msudenver.tsp.persistence.controller;
+
+import edu.msudenver.tsp.persistence.dto.AccountsDto;
+import edu.msudenver.tsp.persistence.repository.AccountsRepository;
+import lombok.AllArgsConstructor;
+import org.springframework.web.bind.annotation.*;
+
+import java.util.Optional;
+
+@RestController
+@AllArgsConstructor
+@RequestMapping("/accounts")
+public class AccountController {
+    private final AccountsRepository accountsRepository;
+
+    @GetMapping("/")
+    public @ResponseBody Iterable<AccountsDto> getListOfAccounts() {
+        return accountsRepository.findAll();
+    }
+
+    @GetMapping("/{id}")
+    public @ResponseBody
+    Optional<AccountsDto> getAccountById(@PathVariable("id") final Integer id) {
+        return accountsRepository.findById(id);
+    }
+}
@@ -0,0 +1,126 @@
+package edu.msudenver.tsp.persistence.controller;
+
+import edu.msudenver.tsp.persistence.dto.DefinitionDto;
+import edu.msudenver.tsp.persistence.repository.DefinitionRepository;
+import lombok.AllArgsConstructor;
+import lombok.extern.slf4j.Slf4j;
+import org.springframework.http.HttpStatus;
+import org.springframework.http.ResponseEntity;
+import org.springframework.util.StopWatch;
+import org.springframework.validation.BindingResult;
+import org.springframework.validation.annotation.Validated;
+import org.springframework.web.bind.annotation.*;
+
+import javax.validation.Valid;
+import javax.validation.groups.Default;
+import java.util.List;
+import java.util.Optional;
+
+@Slf4j
+@RestController
+@AllArgsConstructor
+@RequestMapping(path = "/definitions/")
+public class DefinitionController {
+    private final DefinitionRepository definitionRepository;
+
+    @GetMapping("/")
+    public @ResponseBody
+    ResponseEntity<Iterable<DefinitionDto>> getAllDefinitions() {
+        LOG.info("Received request to list all definitions");
+
+        LOG.debug("Querying for list of all definitions");
+        final StopWatch stopWatch = new StopWatch();
+        stopWatch.start();
+
+        final List<DefinitionDto> listOfDefinitions = definitionRepository.findAll();
+
+        stopWatch.stop();
+
+        LOG.debug("Successfully completed query. Query took " + stopWatch.getTotalTimeMillis() + "ms to complete");
+        LOG.info("Returning list of all definition with size " + listOfDefinitions.size());
+
+        return new ResponseEntity<>(listOfDefinitions, HttpStatus.OK);
+    }
+
+    @GetMapping("/{id}")
+    public @ResponseBody
+    ResponseEntity<DefinitionDto> getDefinitionById(@PathVariable("id") final Integer id) {
+        LOG.info("Received request to query for definition with id " + id);
+        if (id == null) {
+            LOG.error("ERROR: ID was null");
+            return new ResponseEntity<>(HttpStatus.BAD_REQUEST);
+        }
+
+        LOG.debug("Querying for definition with id " + id);
+
+        final StopWatch stopWatch = new StopWatch();
+        stopWatch.start();
+
+        final Optional<DefinitionDto> definition = definitionRepository.findById(id);
+
+        stopWatch.stop();
+
+        LOG.debug("Received response from server: query took " + stopWatch.getTotalTimeMillis() + "ms to complete");
+        return definition.map(definitionDto -> {
+                LOG.info("Returning definition with id " + id);
+                return new ResponseEntity<>(definitionDto, HttpStatus.OK);
+        }).orElseGet(
+                        () -> {
+                            LOG.warn("No definition was found with id " + id);
+                            return new ResponseEntity<>(HttpStatus.NOT_FOUND);
+                        });
+
+    }
+
+    @PostMapping("/")
+    @Validated({DefinitionDto.Insert.class, Default.class})
+    public @ResponseBody ResponseEntity<DefinitionDto> insertDefinition(
+            @Valid @RequestBody final DefinitionDto definitionDto,
+            final BindingResult bindingResult) {
+        LOG.info("Received request to insert a new definition");
+        if (bindingResult.hasErrors()) {
+            LOG.error("Binding result is unprocessable");
+            return new ResponseEntity<>(HttpStatus.UNPROCESSABLE_ENTITY);
+        }
+
+        if (definitionDto == null) {
+            LOG.error("Passed entity is unprocessable");
+            return new ResponseEntity<>(HttpStatus.BAD_REQUEST);
+        }
+
+        LOG.debug("Saving new definition");
+
+        final StopWatch stopWatch = new StopWatch();
+        stopWatch.start();
+
+        final DefinitionDto savedDefinition = definitionRepository.save(definitionDto);
+
+        stopWatch.stop();
+        LOG.debug("Received response from server: query took " + stopWatch.getTotalTimeMillis() + "ms to complete");
+
+        LOG.info("Returning the newly created definition with id " + savedDefinition.getId());
+        return new ResponseEntity<>(savedDefinition, HttpStatus.CREATED);
+    }
+
+    @DeleteMapping("/{id}")
+    public @ResponseBody ResponseEntity<Void> deleteDefinitionById(@PathVariable("id") final Integer id) {
+        LOG.info("Received request to delete definition with id " + id);
+        if (id == null) {
+            LOG.error("Specified id is null");
+            return new ResponseEntity<>(HttpStatus.BAD_REQUEST);
+        }
+
+        LOG.debug("Deleting definition with id " + id);
+
+        final StopWatch stopWatch = new StopWatch();
+        stopWatch.start();
+
+        definitionRepository.deleteById(id);
+
+        stopWatch.stop();
+
+        LOG.debug("Received response from server: query took " + stopWatch.getTotalTimeMillis() + "ms to complete");
+
+        return new ResponseEntity<>(HttpStatus.NO_CONTENT);
+    }
+}
@@ -0,0 +1,11 @@
+package edu.msudenver.tsp.persistence.controller;
+
+import edu.msudenver.tsp.persistence.repository.NotationRepository;
+import lombok.AllArgsConstructor;
+import org.springframework.stereotype.Component;
+
+@Component
+@AllArgsConstructor
+public class NotationController {
+    final private NotationRepository notationRepository;
+}
@@ -0,0 +1,11 @@
+package edu.msudenver.tsp.persistence.controller;
+
+import edu.msudenver.tsp.persistence.repository.ProofRepository;
+import lombok.AllArgsConstructor;
+import org.springframework.stereotype.Component;
+
+@Component
+@AllArgsConstructor
+public class ProofController {
+    final private ProofRepository proofRepository;
+}
@@ -0,0 +1,11 @@
+package edu.msudenver.tsp.persistence.controller;
+
+import edu.msudenver.tsp.persistence.repository.TheoremRepository;
+import lombok.AllArgsConstructor;
+import org.springframework.stereotype.Component;
+
+@Component
+@AllArgsConstructor
+public class TheoremController {
+    final private TheoremRepository theoremRepository;
+}
@@ -1,28 +0,0 @@
-package edu.msudenver.tsp.persistence.dao;
-
-class BaseDao {
-
-//    <T> T findById(final int id) {
-//        //TODO insert DB calls for finding objects by their ID's
-//    }
-
-//    <T> List<T> queryForList(final String query) {
-//        //TODO insert DB calls for querying for lists based on the specified query
-//    }
-
-//    <T> T save(final T t) {
-//        //TODO insert DB calls here for insert and update
-//    }
-
-    <T> void delete(final T t) {
-        //TODO insert DB calls here to delete
-    }
-
-//    private <T> T insert(final T object) {
-//        // TODO insert DB calls to insert records
-//    }
-//
-//    private <T> T update(final T object) {
-//        //TODO insert DB calls to update records
-//    }
-}
@@ -1,4 +0,0 @@
-package edu.msudenver.tsp.persistence.dao;
-
-public class DefinitionDao extends BaseDao {
-}
@@ -1,4 +0,0 @@
-package edu.msudenver.tsp.persistence.dao;
-
-public class NotationDao extends BaseDao {
-}
@@ -1,4 +0,0 @@
-package edu.msudenver.tsp.persistence.dao;
-
-public class ProofDao extends BaseDao {
-}
@@ -1,4 +0,0 @@
-package edu.msudenver.tsp.persistence.dao;
-
-public class TheoremDao extends BaseDao {
-}
@@ -0,0 +1,28 @@
+package edu.msudenver.tsp.persistence.dto;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+import lombok.Data;
+import lombok.EqualsAndHashCode;
+import org.springframework.data.jpa.domain.support.AuditingEntityListener;
+
+import javax.persistence.Entity;
+import javax.persistence.EntityListeners;
+import javax.persistence.Temporal;
+import javax.persistence.TemporalType;
+import javax.validation.constraints.NotNull;
+import javax.validation.constraints.Size;
+import java.io.Serializable;
+import java.util.Date;
+
+@Entity(name = "accounts")
+@EntityListeners(AuditingEntityListener.class)
+@Data
+@EqualsAndHashCode(callSuper = true)
+public class AccountsDto extends BaseDto implements Serializable {
+    @Size(max = 50) private String username;
+    @Size(max = 256) private String password;
+    @NotNull @JsonProperty("administrator_status") private boolean administratorStatus;
+    @Temporal(TemporalType.DATE) @JsonProperty("last_login") private Date lastLogin;
+
+    public static final long serialVersionUID = 7095627971593953734L;
+}
@@ -1,9 +1,40 @@
 package edu.msudenver.tsp.persistence.dto;

+import com.vladmihalcea.hibernate.type.array.IntArrayType;
+import com.vladmihalcea.hibernate.type.array.StringArrayType;
+import com.vladmihalcea.hibernate.type.json.JsonBinaryType;
+import com.vladmihalcea.hibernate.type.json.JsonNodeBinaryType;
+import com.vladmihalcea.hibernate.type.json.JsonNodeStringType;
+import com.vladmihalcea.hibernate.type.json.JsonStringType;
+import lombok.AccessLevel;
+import lombok.AllArgsConstructor;
 import lombok.Data;
+import lombok.NoArgsConstructor;
+import org.hibernate.annotations.TypeDef;
+import org.hibernate.annotations.TypeDefs;
+
+import javax.persistence.*;
+import java.io.Serializable;
+

@Data
-class BaseDto {
-    private String id;
-    private int version;
+@AllArgsConstructor
+@NoArgsConstructor(access = AccessLevel.PROTECTED)
+@MappedSuperclass
+@TypeDefs({
+        @TypeDef(name = "string-array", typeClass = StringArrayType.class),
+        @TypeDef(name = "int-array", typeClass = IntArrayType.class),
+        @TypeDef(name = "json", typeClass = JsonStringType.class),
+        @TypeDef(name = "jsonb", typeClass = JsonBinaryType.class),
+        @TypeDef(name = "jsonb-node", typeClass = JsonNodeBinaryType.class),
+        @TypeDef(name = "json-node", typeClass = JsonNodeStringType.class),
+})
+public class BaseDto implements Serializable {
+    @Id
+    @GeneratedValue(strategy = GenerationType.IDENTITY)
+    private int id;
+    @Version
+    private Integer version;
+
+    public static final long serialVersionUID = -1686252381978213945L;
 }
@@ -0,0 +1,17 @@
+package edu.msudenver.tsp.persistence.dto;
+
+import lombok.Getter;
+import lombok.Setter;
+import lombok.ToString;
+
+import java.io.Serializable;
+import java.util.List;
+
+@Getter
+@Setter
+@ToString
+public class Definition implements Serializable {
+    private List<String> definitions;
+
+    public static final long serialVersionUID = -2208496232532214840L;
+}
@@ -1,4 +1,34 @@
 package edu.msudenver.tsp.persistence.dto;

-public class DefinitionDto extends BaseDto {
+import lombok.Data;
+import lombok.EqualsAndHashCode;
+import org.hibernate.annotations.Type;
+import org.springframework.data.jpa.domain.support.AuditingEntityListener;
+
+import javax.persistence.Column;
+import javax.persistence.Entity;
+import javax.persistence.EntityListeners;
+import javax.persistence.Table;
+import javax.validation.constraints.NotBlank;
+import javax.validation.constraints.Size;
+import java.io.Serializable;
+
+@Entity(name = "definitions")
+@Table(name = "definitions")
+@EntityListeners(AuditingEntityListener.class)
+@Data
+@EqualsAndHashCode(callSuper = true)
+public class DefinitionDto extends BaseDto implements Serializable {
+    @NotBlank(groups = Insert.class, message = "A name must be specified")
+    @Size(min = 1, max = 200, message = "Must be between 1 and 200 characters")
+    private String name;
+
+    @NotBlank(groups = Insert.class, message = "At least one (1) definition must be specified")
+    @Type(type = "json") @Column(columnDefinition = "jsonb") private Definition definition;
+
+    @Type(type = "json") @Column(columnDefinition = "jsonb") private Notation notation;
+
+    public static final long serialVersionUID = -5314619286352932857L;
+
+    public interface Insert {}
 }
@@ -0,0 +1,16 @@
+package edu.msudenver.tsp.persistence.dto;
+
+import lombok.Getter;
+import lombok.Setter;
+import lombok.ToString;
+
+import java.io.Serializable;
+import java.util.List;
+
+@Getter
+@Setter
+@ToString
+public class Notation implements Serializable {
+    private List<String> notations;
+    public static final long serialVersionUID = 2301438318932336121L;
+}
@@ -1,11 +0,0 @@
-package edu.msudenver.tsp.persistence.manager;
-
-import edu.msudenver.tsp.persistence.dao.DefinitionDao;
-import lombok.AllArgsConstructor;
-import org.springframework.stereotype.Component;
-
-@Component
-@AllArgsConstructor
-public class DefinitionManager {
-    final private DefinitionDao definitionDao;
-}
@@ -1,10 +0,0 @@
-package edu.msudenver.tsp.persistence.manager;
-
-import org.springframework.context.annotation.ComponentScan;
-import org.springframework.context.annotation.Configuration;
-
-@Configuration
-@ComponentScan
-public class ManagerConfig {
-
-}
@@ -1,11 +0,0 @@
-package edu.msudenver.tsp.persistence.manager;
-
-import edu.msudenver.tsp.persistence.dao.NotationDao;
-import lombok.AllArgsConstructor;
-import org.springframework.stereotype.Component;
-
-@Component
-@AllArgsConstructor
-public class NotationManager {
-    final private NotationDao notationDao;
-}
@@ -1,11 +0,0 @@
-package edu.msudenver.tsp.persistence.manager;
-
-import edu.msudenver.tsp.persistence.dao.ProofDao;
-import lombok.AllArgsConstructor;
-import org.springframework.stereotype.Component;
-
-@Component
-@AllArgsConstructor
-public class ProofManager {
-    final private ProofDao proofDao;
-}
@@ -1,11 +0,0 @@
-package edu.msudenver.tsp.persistence.manager;
-
-import edu.msudenver.tsp.persistence.dao.TheoremDao;
-import lombok.AllArgsConstructor;
-import org.springframework.stereotype.Component;
-
-@Component
-@AllArgsConstructor
-public class TheoremManager {
-    final private TheoremDao theoremDao;
-}
@@ -0,0 +1,9 @@
+package edu.msudenver.tsp.persistence.repository;
+
+import edu.msudenver.tsp.persistence.dto.AccountsDto;
+import org.springframework.data.jpa.repository.JpaRepository;
+import org.springframework.stereotype.Repository;
+
+@Repository
+public interface AccountsRepository extends JpaRepository<AccountsDto, Integer> {
+}
@@ -0,0 +1,11 @@
+package edu.msudenver.tsp.persistence.repository;
+
+
+import edu.msudenver.tsp.persistence.dto.DefinitionDto;
+import org.springframework.data.jpa.repository.JpaRepository;
+import org.springframework.stereotype.Repository;
+
+@Repository
+public interface DefinitionRepository extends JpaRepository<DefinitionDto, Integer> {
+
+}
@@ -0,0 +1,7 @@
+package edu.msudenver.tsp.persistence.repository;
+
+import edu.msudenver.tsp.persistence.dto.BaseDto;
+import org.springframework.data.repository.CrudRepository;
+
+public interface NotationRepository extends CrudRepository<BaseDto, Long> {
+}
@@ -0,0 +1,7 @@
+package edu.msudenver.tsp.persistence.repository;
+
+import edu.msudenver.tsp.persistence.dto.BaseDto;
+import org.springframework.data.repository.CrudRepository;
+
+public interface ProofRepository extends CrudRepository<BaseDto, Long> {
+}
@@ -0,0 +1,7 @@
+package edu.msudenver.tsp.persistence.repository;
+
+import edu.msudenver.tsp.persistence.dto.BaseDto;
+import org.springframework.data.repository.CrudRepository;
+
+public interface TheoremRepository extends CrudRepository<BaseDto, Long> {
+}
@@ -0,0 +1,13 @@
+spring.jpa.hibernate.ddl-auto = none
+spring.jpa.database=mysql
+spring.datasource.url=jdbc:mysql://127.0.0.1:3306/pandamonium?autoReconnect=true&useSSL=false
+spring.datasource.username=panda
+spring.datasource.password=secret
+spring.datasource.driver-class-name=com.mysql.cj.jdbc.Driver
+spring.jpa.properties.hibernate.dialect = org.hibernate.dialect.MySQL8Dialect
+spring.jpa.show-sql = true
+spring.datasource.tomcat.test-while-idle=true
+spring.datasource.tomcat.validation-query=SELECT 1
+logging.level.org.springframework.web=DEBUG
+spring.datasource.tomcat.max-active=5
+server.port=8090
@@ -0,0 +1,169 @@
+package edu.msudenver.tsp.persistence.controller;
+
+import edu.msudenver.tsp.persistence.dto.Definition;
+import edu.msudenver.tsp.persistence.dto.DefinitionDto;
+import edu.msudenver.tsp.persistence.dto.Notation;
+import edu.msudenver.tsp.persistence.repository.DefinitionRepository;
+import org.junit.Test;
+import org.junit.runner.RunWith;
+import org.mockito.InjectMocks;
+import org.mockito.Mock;
+import org.mockito.runners.MockitoJUnitRunner;
+import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest;
+import org.springframework.http.HttpStatus;
+import org.springframework.http.ResponseEntity;
+import org.springframework.validation.BindingResult;
+
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Optional;
+
+import static junit.framework.TestCase.assertTrue;
+import static org.junit.Assert.*;
+import static org.mockito.Matchers.anyInt;
+import static org.mockito.Mockito.*;
+
+@RunWith(MockitoJUnitRunner.class)
+@WebMvcTest(controllers = DefinitionController.class)
+public class DefinitionControllerTest {
+    @Mock private DefinitionRepository definitionRepository;
+    @InjectMocks private DefinitionController definitionController;
+    @Mock private BindingResult bindingResult;
+
+    @Test
+    public void testGetAllDefinitions() {
+        final DefinitionDto definitionDto = createDefinition();
+        final List<DefinitionDto> definitionDtoList = new ArrayList<>();
+        definitionDtoList.add(definitionDto);
+        definitionDtoList.add(definitionDto);
+
+        when(definitionRepository.findAll()).thenReturn(definitionDtoList);
+
+        final ResponseEntity<Iterable<DefinitionDto>> responseEntity = definitionController.getAllDefinitions();
+
+        assertNotNull(responseEntity);
+        assertEquals(HttpStatus.OK, responseEntity.getStatusCode());
+        assertTrue(responseEntity.hasBody());
+        assertNotNull(responseEntity.getBody());
+
+        responseEntity.getBody().forEach(definition -> assertEquals(definition, definitionDto));
+    }
+
+    @Test
+    public void testGetDefinitionsById() {
+        final DefinitionDto definitionDto = createDefinition();
+        when(definitionRepository.findById(anyInt())).thenReturn(Optional.ofNullable(definitionDto));
+
+        final ResponseEntity<DefinitionDto> responseEntity = definitionController.getDefinitionById(1);
+
+        assertNotNull(responseEntity);
+        assertTrue(responseEntity.hasBody());
+        assertNotNull(responseEntity.getBody());
+        assertEquals(HttpStatus.OK, responseEntity.getStatusCode());
+        assertEquals(definitionDto, responseEntity.getBody());
+        verify(definitionRepository).findById(anyInt());
+    }
+
+    @Test
+    public void testGetDefinitionById_nullId() {
+        final ResponseEntity responseEntity = definitionController.getDefinitionById(null);
+
+        assertNotNull(responseEntity);
+        assertFalse(responseEntity.hasBody());
+        assertEquals(HttpStatus.BAD_REQUEST, responseEntity.getStatusCode());
+        verifyZeroInteractions(definitionRepository);
+    }
+
+    @Test
+    public void testGetDefinitionById_noDefinitionFound() {
+        when(definitionRepository.findById(anyInt())).thenReturn(Optional.empty());
+
+        final ResponseEntity responseEntity = definitionController.getDefinitionById(1);
+
+        assertNotNull(responseEntity);
+        assertFalse(responseEntity.hasBody());
+        assertEquals(HttpStatus.NOT_FOUND, responseEntity.getStatusCode());
+        verify(definitionRepository).findById(anyInt());
+    }
+
+    @Test
+    public void testInsertDefinition() {
+        final DefinitionDto definitionDto = createDefinition();
+        when(definitionRepository.save(any(DefinitionDto.class))).thenReturn(definitionDto);
+
+        final ResponseEntity<DefinitionDto> responseEntity = definitionController.insertDefinition(definitionDto, bindingResult);
+
+        assertNotNull(responseEntity);
+        assertTrue(responseEntity.hasBody());
+        assertNotNull(responseEntity.getBody());
+        assertEquals(HttpStatus.CREATED, responseEntity.getStatusCode());
+        assertEquals(definitionDto, responseEntity.getBody());
+        verify(definitionRepository).save(any(DefinitionDto.class));
+    }
+
+    @Test
+    public void testInsertDefinition_definitionDtoIsNull() {
+        final ResponseEntity responseEntity = definitionController.insertDefinition(null, bindingResult);
+
+        assertNotNull(responseEntity);
+        assertFalse(responseEntity.hasBody());
+        assertEquals(HttpStatus.BAD_REQUEST, responseEntity.getStatusCode());
+        verifyZeroInteractions(definitionRepository);
+    }
+
+    @Test
+    public void testInsertDefinition_bindingResultHasErrors() {
+        final DefinitionDto definitionDto = createDefinition();
+        when(bindingResult.hasErrors()).thenReturn(true);
+
+        final ResponseEntity responseEntity = definitionController.insertDefinition(definitionDto, bindingResult);
+
+        assertNotNull(responseEntity);
+        assertFalse(responseEntity.hasBody());
+        assertEquals(HttpStatus.UNPROCESSABLE_ENTITY, responseEntity.getStatusCode());
+        verifyZeroInteractions(definitionRepository);
+    }
+
+    @Test
+    public void testDeleteDefinitionById() {
+        doNothing().when(definitionRepository).deleteById(anyInt());
+
+        final ResponseEntity responseEntity = definitionController.deleteDefinitionById(1);
+
+        assertNotNull(responseEntity);
+        assertFalse(responseEntity.hasBody());
+        assertEquals(HttpStatus.NO_CONTENT, responseEntity.getStatusCode());
+        verify(definitionRepository).deleteById(anyInt());
+    }
+
+    @Test
+    public void testDeleteDefinitionById_nullId() {
+        final ResponseEntity responseEntity = definitionController.deleteDefinitionById(null);
+
+        assertNotNull(responseEntity);
+        assertFalse(responseEntity.hasBody());
+        assertEquals(HttpStatus.BAD_REQUEST, responseEntity.getStatusCode());
+        verifyZeroInteractions(definitionRepository);
+    }
+
+    private DefinitionDto createDefinition() {
+        final List<String> definitionList = new ArrayList<>();
+        definitionList.add("Test definition 1");
+
+        final Definition definition = new Definition();
+        definition.setDefinitions(definitionList);
+
+        final List<String> notationList = new ArrayList<>();
+        notationList.add("\\testLaTeX");
+
+        final Notation notation = new Notation();
+        notation.setNotations(notationList);
+
+        final DefinitionDto definitionDto = new DefinitionDto();
+        definitionDto.setName("Test Name");
+        definitionDto.setDefinition(definition);
+        definitionDto.setNotation(notation);
+
+        return definitionDto;
+    }
+}
@@ -7,6 +7,12 @@ version '1.0'

 sourceCompatibility = 1.8

+sonarqube {
+    properties {
+        property "sonar.projectName", 'Theorem Prover Services'
+    }
+}
+
 repositories {
    mavenCentral()
 }
@@ -1,26 +1,26 @@
 package edu.msudenver.tsp.services.parser;

-import edu.msudenver.tsp.persistence.manager.DefinitionManager;
-import edu.msudenver.tsp.persistence.manager.NotationManager;
-import edu.msudenver.tsp.persistence.manager.ProofManager;
-import edu.msudenver.tsp.persistence.manager.TheoremManager;
+import edu.msudenver.tsp.persistence.controller.DefinitionController;
+import edu.msudenver.tsp.persistence.controller.NotationController;
+import edu.msudenver.tsp.persistence.controller.ProofController;
+import edu.msudenver.tsp.persistence.controller.TheoremController;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.stereotype.Service;

@Service
 class ParserService {
-    private final DefinitionManager definitionManager;
-    private final TheoremManager theoremManager;
-    private final NotationManager notationManager;
-    private final ProofManager proofManager;
+    private final DefinitionController definitionController;
+    private final TheoremController theoremController;
+    private final NotationController notationController;
+    private final ProofController proofController;

    @Autowired
-    public ParserService(final DefinitionManager definitionManager, final TheoremManager theoremManager,
-                         final NotationManager notationManager, final ProofManager proofManager) {
-        this.definitionManager = definitionManager;
-        this.theoremManager = theoremManager;
-        this.notationManager = notationManager;
-        this.proofManager = proofManager;
+    public ParserService(final DefinitionController definitionController, final TheoremController theoremController,
+                         final NotationController notationController, final ProofController proofController) {
+        this.definitionController = definitionController;
+        this.theoremController = theoremController;
+        this.notationController = notationController;
+        this.proofController = proofController;
    }

 }
@@ -1,13 +0,0 @@
-package edu.msudenver.tsp.website;
-
-import org.springframework.web.bind.annotation.RequestMapping;
-import org.springframework.web.bind.annotation.RestController;
-
-@RestController
-public class HelloController {
-
-    @RequestMapping("/")
-    public String index() {
-        return "Welcome to Project Pandamonium!";
-    }
-}
@@ -1,12 +0,0 @@
-package edu.msudenver.tsp.website;
-
-import org.springframework.context.annotation.ComponentScan;
-import org.springframework.context.annotation.Configuration;
-
-@Configuration
-@ComponentScan
-//@PropertySource("classpath:development.properties")
-public class WebsiteConfig {
-
-
-}
@@ -1,13 +0,0 @@
-package edu.msudenver.tsp.website;
-
-import org.junit.Test;
-
-import static org.junit.Assert.assertEquals;
-
-public class HelloControllerTest {
-
-    @Test
-    public void test() {
-        assertEquals(3, 3);
-    }
-}
@@ -1,15 +0,0 @@
-package edu.msudenver.tsp.website.integrationTest;
-
-import org.junit.Test;
-import org.junit.runner.RunWith;
-import org.springframework.test.context.junit4.SpringJUnit4ClassRunner;
-
-import static org.junit.Assert.assertEquals;
-
-@RunWith(SpringJUnit4ClassRunner.class)
-public class HelloControllerIntegrationTest {
-    @Test
-    public void test() {
-        assertEquals(3,3);
-    }
-}
@@ -7,6 +7,12 @@ version '1.0'

 sourceCompatibility = 1.8

+sonarqube {
+    properties {
+        property "sonar.projectName", 'Parsing and Proofs Utilities'
+    }
+}
+
 repositories {
    mavenCentral()
 }