chore: bump Cargo.toml to 0.3.0

CHANGELOG.md

@@ -1,3 +1,74 @@
+## v0.3.0 (2026-04-02)
+
+### Feat
+
+- Added `todo__clear` function to the todo system and updated REPL commands to have a .clear todo as well for significant changes in agent direction
+- Added available tools to prompts for sisyphus and code-reviewer agent families
+- Added available tools to coder prompt
+- Improved token efficiency when delegating from sisyphus -> coder
+- modified sisyphus agents to use the new ddg-search MCP server for web searches instead of built-in model searches
+- Added support for specifying a custom response to multiple-choice prompts when nothing suits the user's needs
+- Supported theming in the inquire prompts in the REPL
+- Added the duckduckgo-search MCP server for searching the web (in addition to the built-in tools for web searches)
+- Support for Gemini OAuth
+- Support authenticating or refreshing OAuth for supported clients from within the REPL
+- Allow first-runs to select OAuth for supported providers
+- Support OAuth authentication flows for Claude
+- Improved MCP server spinup and spindown when switching contexts or settings in the REPL: Modify existing config rather than stopping all servers always and re-initializing if unnecessary
+- Allow the explore agent to run search queries for understanding docs or API specs
+- Allow the oracle to perform web searches for deeper research
+- Added web search support to the main sisyphus agent to answer user queries
+- Created a CodeRabbit-style code-reviewer agent
+- Added configuration option in agents to indicate the timeout for user input before proceeding (defaults to 5 minutes)
+- Added support for sub-agents to escalate user interaction requests from any depth to the parent agents for user interactions
+- built-in user interaction tools to remove the need for the list/confirm/etc prompts in prompt tools and to enhance user interactions in Loki
+- Experimental update to sisyphus to use the new parallel agent spawning system
+- Added an agent configuration property that allows auto-injecting sub-agent spawning instructions (when using the built-in sub-agent spawning system)
+- Auto-dispatch support of sub-agents and support for the teammate pattern between subagents
+- Full passive task queue integration for parallelization of subagents
+- Implemented initial scaffolding for built-in sub-agent spawning tool call operations
+- Initial models for agent parallelization
+- Added interactive prompting between the LLM and the user in Sisyphus using the built-in Bash utils scripts
+
+### Fix
+
+- Clarified user text input interaction
+- recursion bug with similarly named Bash search functions in the explore agent
+- updated the error for unauthenticated oauth to include the REPL .authenticated command
+- Corrected a bug in the coder agent that wasn't outputting a summary of the changes made, so the parent Sisyphus agent has no idea if the agent worked or not
+- Claude code system prompt injected into claude requests to make them valid once again
+- Do not inject tools when models don't support them; detect this conflict before API calls happen
+- The REPL .authenticate command works from within sessions, agents, and roles with pre-configured models
+- Implemented the path normalization fix for the oracle and explore agents
+- Updated the atlassian MCP server endpoint to account for future deprecation
+- Fixed a bug in the coder agent that was causing the agent to create absolute paths from the current directory
+- the updated regex for secrets injection broke MCP server secrets interpolation because the regex greedily matched on new lines, replacing too much content. This fix just ignores commented out lines in YAML files by skipping commented out lines.
+- Don't try to inject secrets into commented-out lines in the config
+- Removed top_p parameter from some agents so they can work across model providers
+- Improved sub-agent stdout and stderr output for users to follow
+- Inject agent variables into environment variables for global tool calls when invoked from agents to modify global tool behavior
+- Removed the unnecessary execute_commands tool from the oracle agent
+- Added auto_confirm to the coder agent so sub-agent spawning doesn't freeze
+- Fixed a bug in the new supervisor and todo built-ins that was causing errors with OpenAI models
+- Added condition to sisyphus to always output a summary to clearly indicate completion
+- Updated the sisyphus prompt to explicitly tell it to delegate to the coder agent when it wants to write any code at all except for trivial changes
+- Added back in the auto_confirm variable into sisyphus
+- Removed the now unnecessary is_stale_response that was breaking auto-continuing with parallel agents
+- Bypassed enabled_tools for user interaction tools so if function calling is enabled at all, the LLM has access to the user interaction tools when in REPL mode
+- When parallel agents run, only write to stdout from the parent and only display the parent's throbber
+- Forgot to implement support for failing a task and keep all dependents blocked
+- Clean up orphaned sub-agents when the parent agent
+- Fixed the bash prompt utils so that they correctly show output when being run by a tool invocation
+- Forgot to automatically add the bidirectional communication back up to parent agents from sub-agents (i.e. need to be able to check inbox and send messages)
+- Agent delegation tools were not being passed into the {{__tools__}} placeholder so agents weren't delegating to subagents
+
+### Refactor
+
+- Made the oauth module more generic so it can support loopback OAuth (not just manual)
+- Changed the default session name for Sisyphus to temp (to require users to explicitly name sessions they wish to save)
+- Updated the sisyphus agent to use the built-in user interaction tools instead of custom bash-based tools
+- Cleaned up some left-over implementation stubs
+
 ## v0.2.0 (2026-02-14)
 
 ### Feat

Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "loki-ai"
-version = "0.2.0"
+version = "0.3.0"
 edition = "2024"
 authors = ["Alex Clarke <alex.j.tusa@gmail.com>"]
 description = "An all-in-one, batteries included LLM CLI Tool"

assets/agents/.shared/utils.sh

@@ -2,68 +2,6 @@
 # Shared Agent Utilities - Minimal, focused helper functions
 set -euo pipefail
 
-#############################
-## CONTEXT FILE MANAGEMENT ##
-#############################
-
-get_context_file() {
-  local project_dir="${LLM_AGENT_VAR_PROJECT_DIR:-.}"
-  echo "${project_dir}/.loki-context"
-}
-
-# Initialize context file for a new task
-# Usage: init_context "Task description"
-init_context() {
-  local task="$1"
-  local project_dir="${LLM_AGENT_VAR_PROJECT_DIR:-.}"
-  local context_file
-  context_file=$(get_context_file)
-  
-  cat > "${context_file}" <<EOF
-## Project: ${project_dir}
-## Task: ${task}
-## Started: $(date -Iseconds)
-
-### Prior Findings
-
-EOF
-}
-
-# Append findings to the context file
-# Usage: append_context "agent_name" "finding summary
-append_context() {
-  local agent="$1"
-  local finding="$2"
-  local context_file
-  context_file=$(get_context_file)
-
-  if [[ -f "${context_file}" ]]; then
-    {
-      echo ""
-      echo "[${agent}]:"
-      echo "${finding}"
-    } >> "${context_file}"
-  fi
-}
-
-# Read the current context (returns empty string if no context)
-# Usage: context=$(read_context)
-read_context() {
-  local context_file
-  context_file=$(get_context_file)
-  
-  if [[ -f "${context_file}" ]]; then
-    cat "${context_file}"
-  fi
-}
-
-# Clear the context file
-clear_context() {
-  local context_file
-  context_file=$(get_context_file)
-  rm -f "${context_file}"
-}
-
 #######################
 ## PROJECT DETECTION ##
 #######################
@@ -279,9 +217,9 @@ _detect_with_llm() {
   evidence=$(_gather_project_evidence "${dir}")
   local prompt
   prompt=$(cat <<-EOF
-		
+
 		Analyze this project directory and determine the project type, primary language, and the correct shell commands to build, test, and check (lint/typecheck) it.
-		
+
 		EOF
 	)
   prompt+=$'\n'"${evidence}"$'\n'
@@ -348,77 +286,11 @@ detect_project() {
   echo '{"type":"unknown","build":"","test":"","check":""}'
 }
 
-######################
-## AGENT INVOCATION ##
-######################
-
-# Invoke a subagent with optional context injection
-# Usage: invoke_agent <agent_name> <prompt> [extra_args...]
-invoke_agent() {
-  local agent="$1"
-  local prompt="$2"
-  shift 2
-
-  local context
-  context=$(read_context)
-
-  local full_prompt
-  if [[ -n "${context}" ]]; then
-    full_prompt="## Orchestrator Context
-
-The orchestrator (sisyphus) has gathered this context from prior work:
-
-<context>
-${context}
-</context>
-
-## Your Task
-
-${prompt}"
-  else
-    full_prompt="${prompt}"
-  fi
-
-  env AUTO_CONFIRM=true loki --agent "${agent}" "$@" "${full_prompt}" 2>&1
-}
-
-# Invoke a subagent and capture a summary of its findings
-# Usage: result=$(invoke_agent_with_summary "explore" "find auth patterns")
-invoke_agent_with_summary() {
-  local agent="$1"
-  local prompt="$2"
-  shift 2
-
-  local output
-  output=$(invoke_agent "${agent}" "${prompt}" "$@")
-
-  local summary=""
-
-  if echo "${output}" | grep -q "FINDINGS:"; then
-    summary=$(echo "${output}" | sed -n '/FINDINGS:/,/^[A-Z_]*COMPLETE/p' | grep "^- " | sed 's/^- /  - /')
-  elif echo "${output}" | grep -q "CODER_COMPLETE:"; then
-    summary=$(echo "${output}" | grep "CODER_COMPLETE:" | sed 's/CODER_COMPLETE: *//')
-  elif echo "${output}" | grep -q "ORACLE_COMPLETE"; then
-    summary=$(echo "${output}" | sed -n '/^## Recommendation/,/^## /{/^## Recommendation/d;/^## /d;p}' | sed '/^$/d' | head -10)
-  fi
-
-  # Failsafe: extract up to 5 meaningful lines if no markers found
-  if [[ -z "${summary}" ]]; then
-    summary=$(echo "${output}" | grep -v "^$" | grep -v "^#" | grep -v "^\-\-\-" | tail -10 | head -5)
-  fi
-
-  if [[ -n "${summary}" ]]; then
-    append_context "${agent}" "${summary}"
-  fi
-
-  echo "${output}"
-}
-
 ###########################
 ## FILE SEARCH UTILITIES ##
 ###########################
 
-search_files() {
+_search_files() {
   local pattern="$1"
   local dir="${2:-.}"
   

assets/agents/code-reviewer/config.yaml

@@ -122,3 +122,6 @@ instructions: |
   - Project: {{project_dir}}
   - CWD: {{__cwd__}}
   - Shell: {{__shell__}}
+  
+  ## Available Tools:
+  {{__tools__}}

assets/agents/coder/config.yaml

@@ -29,11 +29,30 @@ instructions: |
   ## Your Mission
 
   Given an implementation task:
-  1. Understand what to build (from context provided)
-  2. Study existing patterns (read 1-2 similar files)
+  1. Check for orchestrator context first (see below)
+  2. Fill gaps only. Read files NOT already covered in context
   3. Write the code (using tools, NOT chat output)
   4. Verify it compiles/builds
-  5. Signal completion
+  5. Signal completion with a summary
+
+  ## Using Orchestrator Context (IMPORTANT)
+
+  When spawned by sisyphus, your prompt will often contain a `<context>` block
+  with prior findings: file paths, code patterns, and conventions discovered by
+  explore agents.
+
+  **If context is provided:**
+  1. Use it as your primary reference. Don't re-read files already summarized
+  2. Follow the code patterns shown. Snippets in context ARE the style guide
+  3. Read the referenced files ONLY IF you need more detail (e.g. full function
+     signature, import list, or adjacent code not included in the snippet)
+  4. If context includes a "Conventions" section, follow it exactly
+
+  **If context is NOT provided or is too vague to act on:**
+  Fall back to self-exploration: grep for similar files, read 1-2 examples,
+  match their style.
+
+  **Never ignore provided context.** It represents work already done upstream.
 
   ## Todo System
 
@@ -82,12 +101,13 @@ instructions: |
 
   ## Completion Signal
 
-  End with:
+  When done, end your response with a summary so the parent agent knows what happened:
+
   ```
-  CODER_COMPLETE: [summary of what was implemented]
+  CODER_COMPLETE: [summary of what was implemented, which files were created/modified, and build status]
   ```
 
-  Or if failed:
+  Or if something went wrong:
   ```
   CODER_FAILED: [what went wrong]
   ```
@@ -104,4 +124,6 @@ instructions: |
   - Project: {{project_dir}}
   - CWD: {{__cwd__}}
   - Shell: {{__shell__}}
-
+  
+  ## Available tools:
+  {{__tools__}}

assets/agents/explore/config.yaml

@@ -8,12 +8,13 @@ variables:
     description: Project directory to explore
     default: '.'
 
+mcp_servers:
+  - ddg-search
 global_tools:
   - fs_read.sh
   - fs_grep.sh
   - fs_glob.sh
   - fs_ls.sh
-  - web_search_loki.sh
 
 instructions: |
   You are a codebase explorer. Your job: Search, find, report. Nothing else.
@@ -67,6 +68,9 @@ instructions: |
   ## Context
   - Project: {{project_dir}}
   - CWD: {{__cwd__}}
+  
+  ## Available Tools:
+  {{__tools__}}
 
 conversation_starters:
   - 'Find how authentication is implemented'

assets/agents/explore/tools.sh

@@ -60,7 +60,7 @@ search_files() {
   echo "" >> "$LLM_OUTPUT"
   
   local results
-  results=$(search_files "${pattern}" "${project_dir}")
+  results=$(_search_files "${pattern}" "${project_dir}")
   
   if [[ -n "${results}" ]]; then
     echo "${results}" >> "$LLM_OUTPUT"

assets/agents/file-reviewer/config.yaml

@@ -108,3 +108,6 @@ instructions: |
   ## Context
   - Project: {{project_dir}}
   - CWD: {{__cwd__}}
+  
+  ## Available Tools:
+  {{__tools__}}

assets/agents/oracle/config.yaml

@@ -8,12 +8,13 @@ variables:
     description: Project directory for context
     default: '.'
 
+mcp_servers:
+  - ddg-search
 global_tools:
   - fs_read.sh
   - fs_grep.sh
   - fs_glob.sh
   - fs_ls.sh
-  - web_search_loki.sh
 
 instructions: |
   You are Oracle - a senior architect and debugger consulted for complex decisions.
@@ -74,6 +75,9 @@ instructions: |
   ## Context
   - Project: {{project_dir}}
   - CWD: {{__cwd__}}
+  
+  ## Available Tools:
+  {{__tools__}}
 
 conversation_starters:
   - 'Review this architecture design'

assets/agents/sisyphus/config.yaml

@@ -12,7 +12,7 @@ can_spawn_agents: true
 max_concurrent_agents: 4
 max_agent_depth: 3
 inject_spawn_instructions: true
-summarization_threshold: 4000
+summarization_threshold: 8000
 
 variables:
   - name: project_dir
@@ -22,12 +22,13 @@ variables:
     description: Auto-confirm command execution
     default: '1'
 
+mcp_servers:
+  - ddg-search
 global_tools:
   - fs_read.sh
   - fs_grep.sh
   - fs_glob.sh
   - fs_ls.sh
-  - web_search_loki.sh
   - execute_command.sh
 
 instructions: |
@@ -69,6 +70,45 @@ instructions: |
   | coder | Write/edit files, implement features | Creates/modifies files, runs builds |
   | oracle | Architecture decisions, complex debugging | Advisory, high-quality reasoning |
 
+  ## Coder Delegation Format (MANDATORY)
+
+  When spawning the `coder` agent, your prompt MUST include these sections.
+  The coder has NOT seen the codebase. Your prompt IS its entire context.
+
+  ### Template:
+
+  ```
+  ## Goal
+  [1-2 sentences: what to build/modify and where]
+
+  ## Reference Files
+  [Files that explore found, with what each demonstrates]
+  - `path/to/file.ext` - what pattern this file shows
+  - `path/to/other.ext` - what convention this file shows
+
+  ## Code Patterns to Follow
+  [Paste ACTUAL code snippets from explore results, not descriptions]
+  <code>
+  // From path/to/file.ext - this is the pattern to follow:
+  [actual code explore found, 5-20 lines]
+  </code>
+
+  ## Conventions
+  [Naming, imports, error handling, file organization]
+  - Convention 1
+  - Convention 2
+
+  ## Constraints
+  [What NOT to do, scope boundaries]
+  - Do NOT modify X
+  - Only touch files in Y/
+  ```
+
+  **CRITICAL**: Include actual code snippets, not just file paths.
+  If explore returned code patterns, paste them into the coder prompt.
+  Vague prompts like "follow existing patterns" waste coder's tokens on
+  re-exploration that you already did.
+
   ## Workflow Examples
 
   ### Example 1: Implementation task (explore -> coder, parallel exploration)
@@ -80,12 +120,12 @@ instructions: |
   2. todo__add --task "Explore existing API patterns"
   3. todo__add --task "Implement profile endpoint"
   4. todo__add --task "Verify with build/test"
-  5. agent__spawn --agent explore --prompt "Find existing API endpoint patterns, route structures, and controller conventions"
-  6. agent__spawn --agent explore --prompt "Find existing data models and database query patterns"
+  5. agent__spawn --agent explore --prompt "Find existing API endpoint patterns, route structures, and controller conventions. Include code snippets."
+  6. agent__spawn --agent explore --prompt "Find existing data models and database query patterns. Include code snippets."
   7. agent__collect --id <id1>
   8. agent__collect --id <id2>
   9. todo__done --id 1
-  10. agent__spawn --agent coder --prompt "Create user profiles endpoint following existing patterns. [Include context from explore results]"
+  10. agent__spawn --agent coder --prompt "<structured prompt using Coder Delegation Format above, including code snippets from explore results>"
   11. agent__collect --id <coder_id>
   12. todo__done --id 2
   13. run_build
@@ -134,7 +174,6 @@ instructions: |
 
   ## When to Do It Yourself
 
-  - Single-file reads/writes
   - Simple command execution
   - Trivial changes (typos, renames)
   - Quick file searches

docs/AGENTS.md

@@ -467,11 +467,12 @@ inject_todo_instructions: true   # Include the default todo instructions into pr
 
 ### How It Works
 
-1. When `inject_todo_instructions` is enabled, agents receive instructions on using four built-in tools:
+1. When `inject_todo_instructions` is enabled, agents receive instructions on using five built-in tools:
     - `todo__init`: Initialize a todo list with a goal
     - `todo__add`: Add a task to the list
     - `todo__done`: Mark a task complete
     - `todo__list`: View current todo state
+    - `todo__clear`: Clear the entire todo list and reset the goal
    
    These instructions are a reasonable default that detail how to use Loki's To-Do System. If you wish, 
    you can disable the injection of the default instructions and specify your own instructions for how 

docs/REPL.md

@@ -120,13 +120,14 @@ For more information on sessions and how to use them in Loki, refer to the [sess
 Loki lets you build OpenAI GPT-style agents. The following commands let you interact with and manage your agents in 
 Loki:
 
-| Command              | Description                                                |
-|----------------------|------------------------------------------------------------|
-| `.agent`             | Use an agent                                               |
-| `.starter`           | Display and use conversation starters for the active agent |
-| `.edit agent-config` | Open the agent configuration in your preferred text editor |
-| `.info agent`        | Display information about the active agent                 |
-| `.exit agent`        | Leave the active agent                                     |
+| Command              | Description                                                                                   |
+|----------------------|-----------------------------------------------------------------------------------------------|
+| `.agent`             | Use an agent                                                                                  |
+| `.starter`           | Display and use conversation starters for the active agent                                    |
+| `.clear todo`        | Clear the todo list and stop auto-continuation (requires `auto_continue: true` on the agent)  |
+| `.edit agent-config` | Open the agent configuration in your preferred text editor                                    |
+| `.info agent`        | Display information about the active agent                                                    |
+| `.exit agent`        | Leave the active agent                                                                        |
 
 ![agent](./images/agents/sql.gif)
 

docs/TODO-SYSTEM.md

@@ -117,6 +117,22 @@ Display the current todo list with status of each item.
 
 **Returns:** The full todo list with goal, progress, and item statuses
 
+### `todo__clear`
+Clear the entire todo list and reset the goal. Use when the current task has been canceled or invalidated.
+
+**Parameters:** None
+
+**Returns:** Confirmation that the todo list was cleared
+
+### REPL Command: `.clear todo`
+You can also clear the todo list manually from the REPL by typing `.clear todo`. This is useful when:
+- You gave a custom response that changes or cancels the current task
+- The agent is stuck in auto-continuation with stale todos
+- You want to start fresh without leaving and re-entering the agent
+
+**Note:** This command is only available when an agent with `auto_continue: true` is active. If the todo
+system isn't enabled for the current agent, the command will display an error message.
+
 ## Auto-Continuation
 When `auto_continue` is enabled, Loki automatically sends a continuation prompt if:
 

src/client/claude.rs

@@ -85,7 +85,7 @@ async fn prepare_chat_completions(
         let ready = oauth::prepare_oauth_access_token(client, &provider, self_.name()).await?;
         if !ready {
             bail!(
-                "OAuth configured but no tokens found for '{}'. Run: loki --authenticate {}",
+                "OAuth configured but no tokens found for '{}'. Run: 'loki --authenticate {}' or '.authenticate' in the REPL",
                 self_.name(),
                 self_.name()
             );

src/client/gemini.rs

@@ -111,7 +111,7 @@ async fn prepare_chat_completions(
         let ready = oauth::prepare_oauth_access_token(client, &provider, self_.name()).await?;
         if !ready {
             bail!(
-                "OAuth configured but no tokens found for '{}'. Run: loki --authenticate {}",
+                "OAuth configured but no tokens found for '{}'. Run: 'loki --authenticate {}' or '.authenticate' in the REPL",
                 self_.name(),
                 self_.name()
             );
@@ -181,7 +181,7 @@ async fn prepare_embeddings(
         let ready = oauth::prepare_oauth_access_token(client, &provider, self_.name()).await?;
         if !ready {
             bail!(
-                "OAuth configured but no tokens found for '{}'. Run: loki --authenticate {}",
+                "OAuth configured but no tokens found for '{}'. Run: 'loki --authenticate {}' or '.authenticate' in the REPL",
                 self_.name(),
                 self_.name()
             );

src/config/agent.rs

@@ -476,6 +476,11 @@ impl Agent {
         self.todo_list.mark_done(id)
     }
 
+    pub fn clear_todo_list(&mut self) {
+        self.todo_list.clear();
+        self.reset_continuation();
+    }
+
     pub fn continuation_prompt(&self) -> String {
         self.config.continuation_prompt.clone().unwrap_or_else(|| {
             formatdoc! {"

src/config/prompts.rs

@@ -7,10 +7,12 @@ pub(in crate::config) const DEFAULT_TODO_INSTRUCTIONS: &str = indoc! {"
         - `todo__add`: Add individual tasks. Add all planned steps before starting work.
         - `todo__done`: Mark a task done by id. Call this immediately after completing each step.
         - `todo__list`: Show the current todo list.
+        - `todo__clear`: Clear the entire todo list and reset the goal. Use when the user cancels or changes direction.
 
     RULES:
         - Always create a todo list before starting work.
         - Mark each task done as soon as you finish it; do not batch.
+        - If the user cancels the current task or changes direction, call `todo__clear` immediately.
         - If you stop with incomplete tasks, the system will automatically prompt you to continue."
 };
 

src/config/todo.rs

@@ -67,6 +67,11 @@ impl TodoList {
         self.todos.is_empty()
     }
 
+    pub fn clear(&mut self) {
+        self.goal.clear();
+        self.todos.clear();
+    }
+
     pub fn render_for_model(&self) -> String {
         let mut lines = Vec::new();
         if !self.goal.is_empty() {
@@ -149,6 +154,21 @@ mod tests {
         assert!(rendered.contains("○ 2. Map"));
     }
 
+    #[test]
+    fn test_clear() {
+        let mut list = TodoList::new("Some goal");
+        list.add("Task 1");
+        list.add("Task 2");
+        list.mark_done(1);
+        assert!(!list.is_empty());
+
+        list.clear();
+        assert!(list.is_empty());
+        assert!(list.goal.is_empty());
+        assert_eq!(list.todos.len(), 0);
+        assert!(!list.has_incomplete());
+    }
+
     #[test]
     fn test_serialization_roundtrip() {
         let mut list = TodoList::new("Roundtrip");

src/function/todo.rs

@@ -76,6 +76,16 @@ pub fn todo_function_declarations() -> Vec<FunctionDeclaration> {
             },
             agent: false,
         },
+        FunctionDeclaration {
+            name: format!("{TODO_FUNCTION_PREFIX}clear"),
+            description: "Clear the entire todo list and reset the goal. Use when the current task has been canceled or invalidated.".to_string(),
+            parameters: JsonSchema {
+                type_value: Some("object".to_string()),
+                properties: Some(IndexMap::new()),
+                ..Default::default()
+            },
+            agent: false,
+        },
     ]
 }
 
@@ -156,6 +166,17 @@ pub fn handle_todo_tool(config: &GlobalConfig, cmd_name: &str, args: &Value) ->
                 None => bail!("No active agent"),
             }
         }
+        "clear" => {
+            let mut cfg = config.write();
+            let agent = cfg.agent.as_mut();
+            match agent {
+                Some(agent) => {
+                    agent.clear_todo_list();
+                    Ok(json!({"status": "ok", "message": "Todo list cleared"}))
+                }
+                None => bail!("No active agent"),
+            }
+        }
         _ => bail!("Unknown todo action: {action}"),
     }
 }

src/function/user_interaction.rs

@@ -181,7 +181,7 @@ fn handle_direct_input(args: &Value) -> Result<Value> {
         .and_then(Value::as_str)
         .ok_or_else(|| anyhow!("'question' is required"))?;
 
-    let answer = Text::new(question).prompt()?;
+    let answer = Text::new(&format!("{question}\nYour answer: ")).prompt()?;
 
     Ok(json!({ "answer": answer }))
 }

src/repl/mod.rs

@@ -33,7 +33,7 @@ use std::{env, mem, process};
 
 const MENU_NAME: &str = "completion_menu";
 
-static REPL_COMMANDS: LazyLock<[ReplCommand; 38]> = LazyLock::new(|| {
+static REPL_COMMANDS: LazyLock<[ReplCommand; 39]> = LazyLock::new(|| {
     [
         ReplCommand::new(".help", "Show this help guide", AssertState::pass()),
         ReplCommand::new(".info", "Show system info", AssertState::pass()),
@@ -137,6 +137,11 @@ static REPL_COMMANDS: LazyLock<[ReplCommand; 38]> = LazyLock::new(|| {
             "Leave agent",
             AssertState::True(StateFlags::AGENT),
         ),
+        ReplCommand::new(
+            ".clear todo",
+            "Clear the todo list and stop auto-continuation",
+            AssertState::True(StateFlags::AGENT),
+        ),
         ReplCommand::new(
             ".rag",
             "Initialize or access RAG",
@@ -804,6 +809,25 @@ pub async fn run_repl_command(
                 Some("messages") => {
                     bail!("Use '.empty session' instead");
                 }
+                Some("todo") => {
+                    let mut cfg = config.write();
+                    match cfg.agent.as_mut() {
+                        Some(agent) => {
+                            if !agent.auto_continue_enabled() {
+                                bail!(
+                                    "The todo system is not enabled for this agent. Set 'auto_continue: true' in the agent's config.yaml to enable it."
+                                );
+                            }
+                            if agent.todo_list().is_empty() {
+                                println!("Todo list is already empty.");
+                            } else {
+                                agent.clear_todo_list();
+                                println!("Todo list cleared.");
+                            }
+                        }
+                        None => bail!("No active agent"),
+                    }
+                }
                 _ => unknown_command()?,
             },
             ".vault" => match split_first_arg(args) {