feat: Added todo__clear function to the todo system and updated REPL commands to have a .clear todo as well for significant changes in agent direction

docs/AGENTS.md

@@ -467,11 +467,12 @@ inject_todo_instructions: true   # Include the default todo instructions into pr
 
 ### How It Works
 
-1. When `inject_todo_instructions` is enabled, agents receive instructions on using four built-in tools:
+1. When `inject_todo_instructions` is enabled, agents receive instructions on using five built-in tools:
     - `todo__init`: Initialize a todo list with a goal
     - `todo__add`: Add a task to the list
     - `todo__done`: Mark a task complete
     - `todo__list`: View current todo state
+    - `todo__clear`: Clear the entire todo list and reset the goal
    
    These instructions are a reasonable default that detail how to use Loki's To-Do System. If you wish, 
    you can disable the injection of the default instructions and specify your own instructions for how 

docs/REPL.md

@@ -120,13 +120,14 @@ For more information on sessions and how to use them in Loki, refer to the [sess
 Loki lets you build OpenAI GPT-style agents. The following commands let you interact with and manage your agents in 
 Loki:
 
-| Command              | Description                                                |
-|----------------------|------------------------------------------------------------|
-| `.agent`             | Use an agent                                               |
-| `.starter`           | Display and use conversation starters for the active agent |
-| `.edit agent-config` | Open the agent configuration in your preferred text editor |
-| `.info agent`        | Display information about the active agent                 |
-| `.exit agent`        | Leave the active agent                                     |
+| Command              | Description                                                                                   |
+|----------------------|-----------------------------------------------------------------------------------------------|
+| `.agent`             | Use an agent                                                                                  |
+| `.starter`           | Display and use conversation starters for the active agent                                    |
+| `.clear todo`        | Clear the todo list and stop auto-continuation (requires `auto_continue: true` on the agent)  |
+| `.edit agent-config` | Open the agent configuration in your preferred text editor                                    |
+| `.info agent`        | Display information about the active agent                                                    |
+| `.exit agent`        | Leave the active agent                                                                        |
 
 ![agent](./images/agents/sql.gif)
 

docs/TODO-SYSTEM.md

@@ -117,6 +117,22 @@ Display the current todo list with status of each item.
 
 **Returns:** The full todo list with goal, progress, and item statuses
 
+### `todo__clear`
+Clear the entire todo list and reset the goal. Use when the current task has been canceled or invalidated.
+
+**Parameters:** None
+
+**Returns:** Confirmation that the todo list was cleared
+
+### REPL Command: `.clear todo`
+You can also clear the todo list manually from the REPL by typing `.clear todo`. This is useful when:
+- You gave a custom response that changes or cancels the current task
+- The agent is stuck in auto-continuation with stale todos
+- You want to start fresh without leaving and re-entering the agent
+
+**Note:** This command is only available when an agent with `auto_continue: true` is active. If the todo
+system isn't enabled for the current agent, the command will display an error message.
+
 ## Auto-Continuation
 When `auto_continue` is enabled, Loki automatically sends a continuation prompt if: