fix: sbx isn't copying base files in their respective directories

assets/sbx-kit/spec.yaml

@@ -6,14 +6,14 @@
 #   sbx cp $HOME/.coyote_password testing:/home/agent/
 #   sbx run testing --kit ./sbx-kit/
 schemaVersion: '1'
-kind: agent
+kind: sandbox
 name: coyote
 displayName: Coyote
 description: >
   An all-in-one, batteries-included LLM CLI tool featuring Shell Assistant,
   CLI & REPL mode, RAG, AI tools & agents, MCP servers, skills, and macros.
 
-agent:
+sandbox:
   image: 'docker/sandbox-templates:shell-docker'
   aiFilename: COYOTE.md
   entrypoint:
@@ -293,7 +293,7 @@ commands:
       background: false
       description: Bootstrap Coyote config directory on first sandbox start
 
-memory: |
+agentContext: |
   ## Sandbox environment
 
   You are running inside a Docker sandbox launched via `sbx run coyote`. The

src/sandbox/mod.rs

@@ -69,7 +69,7 @@ pub fn launch(name: Option<String>, fresh: bool, no_mixins: bool) -> Result<()>
         }
     }
 
-    exec_run(&name, &kit_path)
+    exec_run(&name)
 }
 
 fn ensure_sbx_installed() -> Result<()> {
@@ -316,6 +316,7 @@ fn sandbox_exists(name: &str) -> Result<bool> {
 fn create_sandbox(name: &str, kit_path: &Path, mixins: &[DiscoveredMixin]) -> Result<()> {
     info!("Creating sandbox '{name}'");
     let args = build_create_args(name, kit_path, mixins)?;
+    debug!("sbx {}", args.join(" "));
     let status = Command::new(SBX_BINARY)
         .args(&args)
         .stdin(Stdio::inherit())
@@ -342,6 +343,8 @@ fn build_create_args(
 
     let mut args = vec![
         "create".to_string(),
+        "--name".to_string(),
+        name.to_string(),
         "--kit".to_string(),
         kit_str.to_string(),
     ];
@@ -356,8 +359,6 @@ fn build_create_args(
         args.push(mixin_str);
     }
 
-    args.push("--name".to_string());
-    args.push(name.to_string());
     args.push(SANDBOX_AGENT.to_string());
     args.push(".".to_string());
 
@@ -369,11 +370,17 @@ fn copy_host_files(name: &str) -> Result<()> {
     let home_dir = dirs::home_dir().context("Could not determine home directory")?;
 
     if config_dir.exists() {
-        ensure_sandbox_dir(name, "/home/agent/.config")?;
-        let src = format!("{}/", config_dir.display());
-        let dest = format!("{name}:/home/agent/.config/");
-        sbx_cp(&src, &dest)?;
-        chown_agent_recursive(name, "/home/agent/.config")?;
+        let sandbox_config_dir = "/home/agent/.config/coyote";
+        ensure_sandbox_dir(name, sandbox_config_dir)?;
+        let dest = format!("{name}:{sandbox_config_dir}/");
+        for entry in fs::read_dir(&config_dir)
+            .with_context(|| format!("Failed to read {}", config_dir.display()))?
+        {
+            let entry = entry?;
+            let path = entry.path();
+            sbx_cp(&path.display().to_string(), &dest)?;
+        }
+        chown_agent_recursive(name, sandbox_config_dir)?;
     } else {
         debug!(
             "Skipping config copy: {} does not exist",
@@ -503,12 +510,10 @@ fn sbx_cp(src: &str, dest: &str) -> Result<()> {
     Ok(())
 }
 
-fn exec_run(name: &str, kit_path: &Path) -> Result<()> {
-    let kit_str = kit_path
-        .to_str()
-        .ok_or_else(|| anyhow!("Kit path is not valid UTF-8: {}", kit_path.display()))?;
+fn exec_run(name: &str) -> Result<()> {
+    debug!("sbx run --name {name}");
     let status = Command::new(SBX_BINARY)
-        .args(["run", name, "--kit", kit_str])
+        .args(["run", "--name", name])
         .stdin(Stdio::inherit())
         .stdout(Stdio::inherit())
         .stderr(Stdio::inherit())
@@ -644,14 +649,14 @@ mod tests {
             args,
             vec![
                 "create".to_string(),
+                "--name".to_string(),
+                "my-box".to_string(),
                 "--kit".to_string(),
                 "/cache/sbx-kit".to_string(),
                 "--kit".to_string(),
                 dir_a.display().to_string(),
                 "--kit".to_string(),
                 dir_b.display().to_string(),
-                "--name".to_string(),
-                "my-box".to_string(),
                 "coyote".to_string(),
                 ".".to_string(),
             ]
@@ -669,10 +674,10 @@ mod tests {
             args,
             vec![
                 "create".to_string(),
-                "--kit".to_string(),
-                "/cache/sbx-kit".to_string(),
                 "--name".to_string(),
                 "box".to_string(),
+                "--kit".to_string(),
+                "/cache/sbx-kit".to_string(),
                 "coyote".to_string(),
                 ".".to_string(),
             ]