The DuckDB store was always opened read-write, which takes an exclusive file
lock, so a second Coyote process could not even read the RAG. Querying does not
write, and DuckDB permits many concurrent readers as long as no writer is
attached, so the store is now opened read-only whenever it already carries a
complete schema.
Creating or initializing the store still writes, as does rebuilding, so those
paths take the exclusive handle. The rebuild path upgrades a read-only
connection in place, which every clone of the handle observes because the mode
lives behind the shared mutex rather than beside it. Extension loads and the
HNSW persistence setting are per-connection and are re-established on the
upgraded connection.
An upgrade that loses the race for the write lock reports that another process
holds the RAG and that nothing was written, then reopens read-only so the
session can keep querying. A read-only handle also refuses writes outright, so a
missed upgrade cannot silently discard an ingest.
The attach wizard mapped a collection's vector dimension to a hardcoded list of
model names and printed them as likely candidates. The list was never checked
against the models the user actually has configured, so it could recommend a
model they cannot select, and one entry was a parenthetical note rather than a
model id and so could never match anything. Any list like this rots as models
are released.
The dimension itself comes from the server and is worth stating, so it is still
printed, as is the warning that a mismatched embedding model returns bad
results. Deriving real candidates would need a dimension recorded against each
configured model, which the model config does not carry today.
Point ids were read with as_u64() inside a filter_map, so a string id was
silently dropped and a UUID-keyed collection returned zero hits with no error.
The attach wizard therefore refused such collections and told the user to
rebuild with integer ids, which defeats the purpose of attaching to a
collection someone else already built. LangChain, a common way to populate
Qdrant, uses UUIDs by default.
The integer id was never load-bearing for this driver. DocumentId is a packed
(file, chunk) pair used positionally by the local drivers, but an attached RAG
holds no local files or vectors and every positional consumer already returns
early on it, so the id only has to survive the round trip from search back to
the content fetch. Ids that cannot make that trip as a u64 are interned behind
a synthetic handle and restored when the fetch is issued, leaving collections
that already use integer ids on exactly the path they used before.
An agent-scoped RAG writes its config to <data>/agents/<agent>/<rag>.yaml, so
its sbx mixin sidecar lands beside it as <rag>.sbx-mixin.yaml. Discovery scanned
the agents directory only for a file named exactly sbx-mixin.yaml, and scanned
for suffixed sidecars only in the top-level rags directory, so a RAG attached
while an agent was active contributed no network allow rule and no credential to
the sandbox. The failure was silent: the sandbox launched and the RAG was simply
unreachable from inside it.
The two collectors differed only in the filename shape they matched, so they are
now one scan that takes the set of layouts to look for. The agents directory
asks for both its own sbx-mixin.yaml and the suffixed sidecars one level in,
which is the shape that was missing. Discovery order is unchanged, and it is
load-bearing: each mixin becomes a --kit in list order and later ones layer over
earlier ones, so the workspace mixin must stay last.
`sample_point_id` returns `None` for a collection with no points, so the
UUID guard's `if let Some(..)` fell straight through and the wizard attached
happily. The result is a RAG that answers every query with zero hits and
never says why.
Sample once, then check for emptiness explicitly. This warns and asks rather
than hard-failing: an empty collection is not necessarily a mistake, since
another tool may be about to populate it, and none of the wizard's remaining
probes can distinguish that from a misconfiguration. The confirmation
defaults to "no" so it cannot be walked past by accident, and `attach`
already refuses to run non-interactively, so no unattended path reaches it.
The wizard hard-errored with "Secret 'X' not found in vault. Run
`coyote --add-secret X` first.", throwing away every answer the user had
already given it. Offer to create the secret in place instead, deferring to
`Vault::add_secret` for the masked prompt, the provider write and the
confirmation line, then read it back.
Only a genuine `SecretError::NotFound` triggers the offer. An auth failure,
a provider outage, or the vault being disabled inside a sandbox all
propagate with their own message, because prompting for a value that cannot
be stored would fail one step later and bury the real cause. Declining the
offer fails with both ways out spelled: add the secret up front, or answer
"no" to the API-key question.
`RagNode` gains an optional `driver`, forwarded into `RagInitConfig` so a
graph node can build its knowledge base on duckdb instead of yaml. Nodes
that name no driver forward `None`, which still resolves to yaml, so
existing workflows are unaffected.
An unknown driver is rejected up front rather than at construction time.
`Rag::create` dispatches unknown drivers to its yaml catch-all, so a typo
would otherwise embed every document and persist the bogus string, after
which every subsequent load fails validation and the agent cannot start.
The check asks `RagData::validate()` through a probe value instead of
restating the list of valid drivers, so the two cannot drift.
Only `driver_config["api_key"]` was interpolated, so any credential-bearing
driver field added later would have shipped its raw `{{PLACEHOLDER}}` to the
server. Resolve every value instead, via `resolve_driver_config`.
Resolution still happens into a function-local copy and never touches
`RagData`: `save()` serializes `self.data` and is called by `.set rag_top_k`
and friends, so a resolved credential parked there would be written to the
RAG's YAML in plaintext. The literal `{{NAME}}` also has to survive on disk
because sandbox credential provisioning parses it back out to learn which
vault secret to bind. Scope stays `driver_config` deliberately: the rest of
a RAG file is ingested document text, where `{{...}}` is ordinary content.
Covered by a test that saves after a load and asserts the placeholder, not
the secret, is what reaches the file.
`interpolate_secrets` does not error on a secret the vault cannot resolve:
it substitutes the empty string and returns the name in its second tuple
element. `load_async` discarded that vec, so a typo'd or deleted vault
secret produced `api_key = ""` and an unexplained 401 from Qdrant.
Bail instead, naming the RAG and the missing secrets, matching what global
config loading already does.
`ensure_extension` fell back to `INSTALL` whenever `LOAD` failed. With a cold
extension cache every thread's `LOAD` fails at once, so every thread ran
`INSTALL` concurrently for the same extension. DuckDB installs by downloading
to a temp file and then MOVING it into `~/.duckdb/extensions/...`; POSIX allows
replacing a file other handles hold open, so Linux and macOS survived, but
Windows rejects that move with "Access is denied" and the losing threads failed.
Guard the install step with a process-global mutex and re-check `LOAD` after
acquiring it. The re-check is what bounds the work to a single install: without
it every thread queued behind the winner would still run a redundant `INSTALL`
and repeat the same move over a file that is now open.
`LOAD` is per-connection, so it still runs on every connection; only `INSTALL`
is serialized. An already-installed extension takes the pre-lock fast path and
costs neither a lock nor network. The lock is never held across the connection
mutex, so it cannot invert lock order.
Traced with strace on a cold cache under default test parallelism: before, 17
threads moved files into the store (13 racing on vss alone); after, exactly one
rename per extension.
The RAG attach sidecar was written against the sbx kit v1 spec and still emitted schemaVersion "1" with network.allowedDomains, network.serviceDomains, network.serviceAuth, credentials.sources.<n>.env and environment.proxyManaged. Every one of those keys was removed in kit v2. Coyote does not validate mixins, it copies them byte-for-byte into spec.yaml, so the invalid document surfaced only as an opaque sbx failure with no indication of which mixin caused it.
generate_rag_sbx_mixin now builds the document from the shared serializer structs instead of a format! string, which is how the envelope drifted unnoticed in the first place. render_mixin_yaml and the RAG sidecar both go through a new render_mixin_document, giving one definition of the envelope and one enforcement point for the rule that every inject domain must also appear in permissions.network.allow.
Fix an auth bug the port exposed: inject_rag_secrets bound the API key with sbx secret set, but nothing ever emitted a matching credentials entry, so the proxy held a value with no inject rule and never rewrote the auth header. An attached RAG credential silently did not work inside the sandbox. The sidecar now declares that credential; a RAG with no API key declares none while still receiving egress.
Fix the service id: the bind passed the raw file stem instead of routing it through secret_service_id, so a RAG named My_Docs produced an illegal id. The bind and the generated credentials service now share that derivation and cannot disagree.
Retire sbx_domain_forms in favour of allow_entry_for_url, now pub(crate). It emitted both a bare host and host:port because v1 serviceDomains needed a bare key; v2 has no such need, so the extra entry is simply wrong. It also defaulted a schemeless host to port 6333 while normalize_base_url resolves it to http and port 80, meaning the allow entry named a port the client never dialled.
The DuckDB schema init loaded the vss and fts extensions but nothing ever
installed them, so any machine without them already present failed with
'IO Error: Extension "vss.duckdb_extension" not found'. This surfaced as 13
failing tests in CI while passing locally, because local runs had the
extensions installed already.
Loading is attempted first so an extension that is already present costs
nothing and never touches the network; INSTALL is reached only once, on a
machine seeing the extension for the first time, and reports an actionable
message if it cannot download.
CI cached the extension directory but nothing populated it, so the cache
saved an empty directory forever. The cache key now derives from Cargo.lock
rather than a hardcoded DuckDB version, and a step on cache miss installs the
extensions so the post-job save has something to store.
Adds QdrantProvider as a read-only driver for pre-existing remote Qdrant
collections, an interactive '.rag attach' wizard, and the sandbox credential
and domain-whitelisting wiring that lets an attached RAG work inside a sandbox.
Attach-only by design: rebuild_indexes bails for both the attached and the
unattached case rather than silently succeeding. Coyote never writes to Qdrant
in this change.
Vectors are never hydrated back from Qdrant. Cosine collections L2-normalize
stored vectors on write, so reading them back returns unit-length copies of the
originals; the YAML vector copy is authoritative and the serialization guard
stays scoped to the duckdb driver alone.
Collections keyed by string or UUID point IDs are rejected at attach time. The
read path parses point ids as u64 inside a filter_map, so such a collection
would otherwise yield zero results with no error.
The three response-shape parsers are pure functions over an already-parsed JSON
body, unit-tested against captured fixtures, with the async wrappers delegating
to them rather than duplicating the logic.
'.rag' now splits its first argument, so '.rag attach <name>' no longer tries to
load a RAG literally named 'attach <name>'.
Phase 3 of the RAG driver abstraction. Adds a `DuckDbProvider` that keeps
vectors and document content in a `.duckdb` sidecar next to the existing
YAML metadata, selected by the `driver: duckdb` field.
- `src/rag/providers/duckdb.rs` (new): vector search via the vss extension
and keyword search via fts, an all-or-nothing hydration path (a partial
read is an error, never a shorter map), and an anti-wipe guard that
refuses the destructive `CREATE OR REPLACE TABLE` when `data.vectors` is
empty while `data.files` is not and the store still holds rows.
- `src/rag/mod.rs`: `sync_documents` now refreshes `bm25`/`node_to_docs`
BEFORE the fallible `provider.rebuild_indexes`. `self.data` is already
mutated by that point, so propagating a provider error afterwards would
leave the derived in-memory state describing the previous corpus while
`data` describes the new one. Both rebuilds are pure functions of
`self.data` and cannot fail, so running them first is always safe.
- `src/config/paths.rs`: sidecar path helpers.
- `src/rag/providers/mod.rs`, `src/config/agent.rs`: driver dispatch and
RAG cache keying.
Also keeps `RequestContext::rag_key` in lockstep with `rag` at the two
sites that were still missing it, so that a cache insert and its matching
invalidate are structurally incapable of disagreeing:
- `use_agent` assigned `self.rag` from the agent but never set `rag_key`.
This one was live. Agent RAGs are inserted under `RagKey::Agent(<name>)`,
so with `rag_key == None` the invalidation guards in `rebuild_rag` and
`edit_rag_docs` matched nothing and `.rebuild rag` left the stale cache
entry in place. Worse, a preceding `.rag <name>` left a stale
`Named(<name>)` key attached to the agent's RAG, pointing the
invalidation at an unrelated RAG's cache entry. Now mirrors the insert
key exactly, yielding `None` when the agent has no RAG.
- `exit_agent` cleared `self.rag` but left `rag_key` behind. Latent rather
than live, since `rebuild_rag`/`edit_rag_docs` both bail on
`rag.is_none()` before reaching the invalidate guards, but the guards
that make it unobservable are not the kind of thing to depend on.
Covered by `use_agent_does_not_carry_stale_rag_key`, and by a new
assertion in `exit_agent_clears_all_agent_state`.
Adds the duckdb crate with the bundled feature ahead of any provider
code, so the dependency and build surface can be proven on every CI
target on its own.
duckdb constrains comfy-table to ~7.1, so comfy-table moves from 7.2.2
to 7.1.4 while keeping custom_styling. That feature swaps
measure_text_width for an ANSI-stripping implementation that
render_table's pre-styled cells depend on; dropping it still compiles
and still passes every other test, and only corrupts column widths. A
regression test now renders a styled table at a fixed wrap width and
asserts every line has an equal ANSI-stripped display width.
comfy-table 7.1.4 pins crossterm 0.28 while coyote pins 0.29, so both
now build side by side. comfy_table::Color, Attribute and Cell are
consequently crossterm 0.28 types and must not be used; table styling
stays ANSI-string based.
Caches the DuckDB extension directory in CI, keyed on the runner OS and
the DuckDB version, so vss and fts survive an upstream outage.
Also switches merge_vector_results to f32::total_cmp. The previous
partial_cmp().unwrap_or(Equal) comparator is not total under NaN, which
sort_by is permitted to answer with a panic in release builds.
Introduce a narrow `RagProvider` trait covering vector search and content
retrieval, and make `Rag` delegate to a boxed provider instead of owning an
HNSW index directly. `YamlProvider` is the sole implementation for now.
The trait deliberately stays narrow: embeddings, chunking, BM25 keyword
search, graph RAG, entity extraction, RRF merging and persistence all remain
on `Rag`/`RagData`, so a new storage backend does not have to reimplement
Coyote's indexing logic.
Notable points:
- `fetch_content`'s ordering contract is part of the trait, not an accident.
Implementations must return results in input-`ids` order; `hybrid_search`
passes an RRF-ranked list straight to the prompt builder, so a provider
returning storage order would silently discard the ranking.
- The content store is keyed on `data.files`, never `data.vectors`. Both the
content map and BM25 now route through the new `RagData::iter_documents()`
so the two key spaces match by construction. `RagData::add` zips document
ids with embeddings and truncates silently, so ids in `files \ vectors` are
genuinely reachable.
- A provider keyword-search failure degrades to an empty ranker with a
warning rather than failing the whole query; it is one of three RRF inputs.
It deliberately does not fall back to the local BM25, which would be a
silent ranking-algorithm swap once a provider with native FTS exists.
- The rerank path builds its text and id vectors from a single `fetch_content`
result in one pass, so the reranker's positional indices cannot desync.
This is not a bit-for-bit no-op. `vector_search` now dedups by best score and
sorts globally instead of concatenating per-chunk hit lists. Single-chunk
queries (the common case) are unaffected. Multi-chunk queries get corrected
rank assignment and no longer let a document that matched several query
chunks accumulate multiple RRF contributions. There is no overall cap on the
merged pool — truncation remains `reciprocal_rank_fusion`'s job.
`RagData::get()` is removed: its only two callers were the content lookups
replaced here, and an unused private-module method fails the build under
`--deny warnings`. Its three tests were rewritten against `iter_documents()`,
one of which now guards the files-vs-vectors keying directly.
Implements Phase 2 of the RAG driver abstraction design (§6).
Phase 1 of the RAG driver abstraction (design doc sections 5.1-5.5a).
Data model:
- Add `driver: String` (serde default "yaml" via RagData::default_driver) and
`attached: bool` as the first two fields of RagData, so driver metadata sits
at the top of each RAG YAML. Old files without them load unchanged.
- Add `#[serde(default)]` to the non-Option fields so a minimal attached-RAG
YAML deserializes, and add `skip_serializing_if` to `vectors` so an empty
map renders no `vectors:` key.
- Add a hand-written `impl Default for RagData` delegating to `RagData::new()`.
It is deliberately not derived: a derived impl yields `driver: ""`, which is
not a valid driver string.
Validation (the price of the new serde defaults):
- Add `RagData::validate()`, called from `Rag::load()` after deserialization.
It enforces the (driver, attached) matrix and, critically, numeric floors
that the new defaults would otherwise mask: `top_k >= 1` unconditionally
(a 0 makes every query return nothing, silently), and `chunk_size >= 1` plus
`chunk_overlap < chunk_size` when not attached (a 0 chunk_size is a real
divide-by-zero panic while sizing embedding batches).
- Reject `.set rag_top_k 0` at the setter, before the set/update fork. Without
this, the new load-time floor turns one keystroke into an unloadable RAG:
the setter saves immediately and no dot-command can reach the file again.
Rebuild actually re-embeds now:
- `.rebuild rag` and `--rebuild-rag` previously re-scanned paths and re-embedded
nothing, because the content-hash skip fired regardless of the refresh flag.
Extract that decision into a module-level `find_hash_skip()` free function and
thread a `force_reingest` flag through `sync_documents()` and
`refresh_document_paths()`, set true only from `rebuild_rag()`. `.edit rag-docs`
stays incremental. Re-embedding costs time and API spend, so `rebuild_rag()`
now prints a one-line file-count warning first (no prompt: the path is
reachable from a non-interactive CLI flag).
Attached-RAG guards:
- Block `.rebuild rag` / `--rebuild-rag` and `.edit rag-docs` on attached RAGs,
which Coyote did not index and whose source documents it does not own.
- Add `Rag::driver()`, `Rag::is_attached()` and `Rag::file_count()`, and surface
driver/attached through `Rag::export()` so `.info rag` shows them.
Adds 12 unit tests (1299 -> 1311), including the two gate tests pinning that a
forced re-ingest does not hash-skip while an ordinary refresh still does.
run_prompt_turn previously performed a single completion and returned,
leaving tool calls unexecuted. It now mirrors start_directive's loop:
call -> execute tools -> merge results -> continue until no tool results,
then check the pending-agents guardrail before returning.
The pending-agents guardrail injects a reminder prompt when sub-agents
are pending, matching the same loop termination semantics as --headless.
The session is NOT exited between turns (unlike start_directive) so
multi-turn ACP conversations retain history across session/prompt calls.
Manual gate (tool-probe agent, fs_write + fs_read tools):
id 3 result: {"output":"DONE:probe.txt","stopReason":"end_turn"}
probe.txt exists: YES, content: hello
DEFECT 1: session/prompt now accepts the spec-shaped params as primary:
{"prompt": [{"type": "text", "text": "..."}]}
Text blocks are joined with newlines. Non-text block types are silently
ignored. The legacy params.text alias is preserved as a fallback. -32602
is returned only when neither a non-empty prompt array with text blocks
nor a non-empty text field is present.
DEFECT 2: initialize result now emits protocolVersion as integer 1
instead of the string "1", matching the ACP spec's InitializeResponse.
Tests: 4 new unit tests pin the spec-shaped prompt path, the non-text
block ignore behavior, the missing-both -32602 path, and the numeric
protocolVersion type.
All CLI flag processing (--agent, --role, --rag, --model, --no-memory,
--no-stream, --no-workspace-instructions, etc.) now runs through run()
before the REPL/cmd split. The ACP server is dispatched right before
match is_repl, after apply_prelude and skills loading, so it benefits
from the complete context setup with no duplication or drift risk.
These CLI flags were previously ignored because the ACP branch returned
before run() could apply them. Now the context is configured with the
requested agent, role, RAG index, and model before the server starts.
Session management remains protocol-driven via session/new and session/load.
RenderMode::Silent was incorrectly applied to --headless in addition to
--acp-server. Standalone headless should still display the LLM response;
only ACP mode requires stdout purity for JSON-RPC. The acp server's
run_prompt_turn already sets Silent before each prompt call.
Dark-Alex-17