feat: added skill hint prompt injection and configuration

config.agent.example.yaml

@@ -26,6 +26,9 @@ auto_continue: false             # Enable automatic continuation when incomplete
 max_auto_continues: 10           # Maximum number of automatic continuations before stopping
 inject_todo_instructions: true   # Inject the default todo tool usage instructions into the agent's system prompt
 continuation_prompt: null        # Custom prompt used when auto-continuing (optional; uses default if null)
+inject_skill_instructions: true  # Inject a short hint pointing the model at `skill__list` when skills are enabled
+                                 # (default: true). Suppressed automatically when no skills are available.
+skill_instructions: null         # Custom text for the skill hint (optional; uses built-in default if null)
 # Sub-Agent Spawning System
 # Enable this agent to spawn and manage child agents in parallel.
 # See https://github.com/Dark-Alex-17/coyote/wiki/Agents for detailed documentation.

config.example.yaml

@@ -162,6 +162,10 @@ auto_continue: false              # Enable automatic continuation when incomplet
 max_auto_continues: 10            # Maximum number of automatic continuations before stopping (default: 10)
 inject_todo_instructions: true    # Inject default todo usage instructions into the system prompt (default: true)
 continuation_prompt: null         # Custom prompt used when auto-continuing. If null, uses built-in default
+inject_skill_instructions: true   # Inject a short hint pointing the model at `skill__list` when skills are enabled in
+                                  # this context. Only injected if `function_calling_support`, `skills_enabled`, and the
+                                  # effective enabled skill set is non-empty (default: true).
+skill_instructions: null          # Custom text used for the skill hint when injected. If null, uses built-in default.
 
 # ---- Session ----
 # See the [Session documentation](https://github.com/Dark-Alex-17/coyote/wiki/Sessions) for more information

config.role.example.md

@@ -30,5 +30,8 @@ auto_continue: false                  # Enable automatic continuation when incom
 max_auto_continues: 10                # Maximum number of automatic continuations before stopping (default: 10)
 inject_todo_instructions: true        # Inject default todo tool usage instructions into the system prompt (default: true)
 continuation_prompt: null             # Custom prompt used when auto-continuing. If null, uses built-in default
+inject_skill_instructions: true       # Inject a short hint pointing the model at `skill__list` when skills are enabled 
+                                      # (default: true). Suppressed automatically when no skills are available.
+skill_instructions: null              # Custom text for the skill hint (optional; uses built-in default if null)
 ---
 You are an expert at doing things. This is where you write the instructions for the role.

graph.example.yaml

@@ -63,6 +63,9 @@ enabled_skills:
   - code-review
   - git-master
   - ai-slop-remover
+inject_skill_instructions: true   # Inject a hint pointing the model at `skill__list`. Defaults to true; suppressed
+                                  # automatically when no skills are available.
+skill_instructions: null          # Custom text for the skill hint (optional; uses the built-in default if omitted).
 
 conversation_starters:             # Suggested prompts surfaced in the UI
   - "Research the current state of WebAssembly outside the browser"
@@ -176,6 +179,9 @@ nodes:
     skills_enabled: true       # Whether skills are enabled on this llm node; defaults to 'true'
     enabled_skills:
       - ai-slop-remover
+    inject_skill_instructions: true   # Override skill-hint injection for just this node. Falls back to
+                                      # agent/graph/global default when omitted.
+    skill_instructions: null          # Per-node skill-hint text override; uses the built-in default when omitted.
     output_schema:             # Optional JSON Schema. The output is parsed to JSON
       type: object             # and its top-level object keys auto-merge into state
       properties:              # (so `topic` / `needs_deep_dive` become {{topic}} etc).

src/config/agent.rs

@@ -464,6 +464,14 @@ impl Agent {
         self.config.continuation_prompt.clone()
     }
 
+    pub fn inject_skill_instructions(&self) -> bool {
+        self.config.inject_skill_instructions
+    }
+
+    pub fn skill_instructions_value(&self) -> Option<String> {
+        self.config.skill_instructions.clone()
+    }
+
     pub fn can_spawn_agents(&self) -> bool {
         self.config.can_spawn_agents
     }
@@ -625,6 +633,10 @@ pub struct AgentConfig {
     pub inject_todo_instructions: bool,
     #[serde(default = "default_true")]
     pub inject_spawn_instructions: bool,
+    #[serde(default = "default_true")]
+    pub inject_skill_instructions: bool,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub skill_instructions: Option<String>,
     #[serde(skip_serializing_if = "Option::is_none")]
     pub compression_threshold: Option<usize>,
     #[serde(default)]
@@ -704,6 +716,8 @@ impl AgentConfig {
             mcp_servers: graph.mcp_servers.clone(),
             skills_enabled: graph.skills_enabled,
             enabled_skills: graph.enabled_skills.clone(),
+            inject_skill_instructions: graph.inject_skill_instructions.unwrap_or(true),
+            skill_instructions: graph.skill_instructions.clone(),
             conversation_starters: graph.conversation_starters.clone(),
             variables: graph.variables.clone(),
             can_spawn_agents: graph.has_agent_node(),

src/config/app_config.rs

@@ -52,6 +52,8 @@ pub struct AppConfig {
     pub max_auto_continues: usize,
     pub inject_todo_instructions: bool,
     pub continuation_prompt: Option<String>,
+    pub inject_skill_instructions: bool,
+    pub skill_instructions: Option<String>,
 
     pub repl_prelude: Option<String>,
     pub cmd_prelude: Option<String>,
@@ -118,6 +120,8 @@ impl Default for AppConfig {
             max_auto_continues: 10,
             inject_todo_instructions: true,
             continuation_prompt: None,
+            inject_skill_instructions: true,
+            skill_instructions: None,
 
             repl_prelude: None,
             cmd_prelude: None,
@@ -185,6 +189,8 @@ impl AppConfig {
             max_auto_continues: config.max_auto_continues,
             inject_todo_instructions: config.inject_todo_instructions,
             continuation_prompt: config.continuation_prompt,
+            inject_skill_instructions: config.inject_skill_instructions,
+            skill_instructions: config.skill_instructions,
 
             repl_prelude: config.repl_prelude,
             cmd_prelude: config.cmd_prelude,

src/config/mod.rs

@@ -6,7 +6,7 @@ mod install_remote;
 mod macros;
 mod mcp_factory;
 pub(crate) mod paths;
-mod prompts;
+pub(crate) mod prompts;
 mod rag_cache;
 mod request_context;
 mod role;
@@ -28,7 +28,7 @@ pub use self::app_state::AppState;
 pub use self::input::Input;
 pub use self::install_remote::{install_remote, install_remote_from_repl_args};
 #[allow(unused_imports)]
-pub use self::request_context::{RenderMode, RequestContext};
+pub use self::request_context::{RenderMode, RequestContext, should_inject_skill_instructions};
 pub use self::role::{
     CODE_ROLE, CREATE_TITLE_ROLE, EXPLAIN_SHELL_ROLE, Role, RoleLike, SHELL_ROLE,
 };
@@ -214,6 +214,8 @@ pub struct Config {
     pub max_auto_continues: usize,
     pub inject_todo_instructions: bool,
     pub continuation_prompt: Option<String>,
+    pub inject_skill_instructions: bool,
+    pub skill_instructions: Option<String>,
 
     pub repl_prelude: Option<String>,
     pub cmd_prelude: Option<String>,
@@ -280,6 +282,8 @@ impl Default for Config {
             max_auto_continues: 10,
             inject_todo_instructions: true,
             continuation_prompt: None,
+            inject_skill_instructions: true,
+            skill_instructions: None,
 
             repl_prelude: None,
             cmd_prelude: None,

src/config/prompts.rs

@@ -1,5 +1,13 @@
 use indoc::indoc;
 
+pub(crate) const DEFAULT_SKILL_INSTRUCTIONS: &str = indoc! {"
+    ## Skills
+    Specialized skills may be available in this context. Call `skill__list` early in a task to
+    discover any that match the work, then `skill__load` the relevant ones. Their instructions and
+    granted tools will become active for subsequent turns. Call `skill__unload` when their work is
+    complete to keep the context lean."
+};
+
 pub(in crate::config) const DEFAULT_TODO_INSTRUCTIONS: &str = indoc! {"
     ## Task Tracking
     You have built-in task tracking tools. Use them to track your progress:

src/config/request_context.rs

@@ -39,6 +39,7 @@ use indoc::formatdoc;
 use inquire::{Confirm, MultiSelect, Text, list_option::ListOption, validator::Validation};
 use log::warn;
 use parking_lot::RwLock;
+use prompts::DEFAULT_SKILL_INSTRUCTIONS;
 use std::collections::{BTreeSet, HashMap, HashSet};
 use std::fs::{File, OpenOptions, read_dir, read_to_string, remove_dir_all, remove_file};
 use std::io::Write;
@@ -53,6 +54,20 @@ pub struct AutoContinueConfig {
     pub continuation_prompt: Option<String>,
 }
 
+pub struct SkillInstructionsConfig {
+    pub inject: bool,
+    pub instructions: Option<String>,
+}
+
+/// Must stay in sync with the predicate that registers `skill__*` tools in `rebuild_tool_scope`
+/// (and in `graph::llm::run_llm_node`). Telling the model to call tools that are not exposed
+/// is a footgun. `compatible_enabled` is the post-filter universe that `skill__list` would
+/// actually return (cascade-allowed AND surviving `Skill::is_compatible` for current
+/// `mcp_server_support`), so an empty set means the hint has nothing to point at.
+pub fn should_inject_skill_instructions(app: &AppConfig, policy: &SkillPolicy) -> bool {
+    app.function_calling_support && policy.skills_enabled && !policy.compatible_enabled.is_empty()
+}
+
 #[derive(Debug, Clone, Copy, PartialEq, Eq, Default)]
 pub enum RenderMode {
     #[default]
@@ -634,9 +649,62 @@ impl RequestContext {
             self.agent.as_ref(),
             self.session.as_ref(),
         )?;
+
+        if should_inject_skill_instructions(app, &policy) {
+            let config = self.skill_instructions_config();
+            
+            if config.inject {
+                let separator = if role.is_empty_prompt() { "" } else { "\n\n" };
+                
+                role.append_to_prompt(separator);
+                role.append_to_prompt(
+                    config
+                        .instructions
+                        .as_deref()
+                        .unwrap_or(DEFAULT_SKILL_INSTRUCTIONS),
+                );
+            }
+        }
+
         Ok(self.skill_registry.effective_role(&role, &policy))
     }
 
+    pub fn skill_instructions_config(&self) -> SkillInstructionsConfig {
+        if let Some(agent) = &self.agent {
+            return SkillInstructionsConfig {
+                inject: agent.inject_skill_instructions(),
+                instructions: agent.skill_instructions_value(),
+            };
+        }
+
+        let app = &self.app.config;
+        let inject = self
+            .session
+            .as_ref()
+            .and_then(|s| s.inject_skill_instructions())
+            .or_else(|| {
+                self.role
+                    .as_ref()
+                    .and_then(|r| r.inject_skill_instructions())
+            })
+            .unwrap_or(app.inject_skill_instructions);
+        let instructions = self
+            .session
+            .as_ref()
+            .and_then(|s| s.skill_instructions().map(|v| v.to_string()))
+            .or_else(|| {
+                self.role
+                    .as_ref()
+                    .and_then(|r| r.skill_instructions().map(|v| v.to_string()))
+            })
+            .or_else(|| app.skill_instructions.clone());
+
+        SkillInstructionsConfig {
+            inject,
+            instructions,
+        }
+    }
+
     pub fn auto_continue_config(&self) -> AutoContinueConfig {
         if let Some(agent) = &self.agent {
             return AutoContinueConfig {
@@ -1707,7 +1775,7 @@ impl RequestContext {
         }
 
         let value = match key {
-            "continuation_prompt" => raw_value,
+            "continuation_prompt" | "skill_instructions" => raw_value,
             _ => {
                 if raw_value.contains(char::is_whitespace) {
                     bail!("Usage: .set <key> <value>. If value is null, unset key.");
@@ -1907,6 +1975,22 @@ impl RequestContext {
                     self.update_app_config(|app| app.continuation_prompt = value);
                 }
             }
+            "inject_skill_instructions" => {
+                let value: bool = value.parse().with_context(|| "Invalid value")?;
+                if let Some(session) = self.session.as_mut() {
+                    session.set_inject_skill_instructions(Some(value));
+                } else {
+                    self.update_app_config(|app| app.inject_skill_instructions = value);
+                }
+            }
+            "skill_instructions" => {
+                let value: Option<String> = super::parse_value(value)?;
+                if let Some(session) = self.session.as_mut() {
+                    session.set_skill_instructions(value);
+                } else {
+                    self.update_app_config(|app| app.skill_instructions = value);
+                }
+            }
             _ => bail!("Unknown key '{key}'"),
         }
         Ok(())
@@ -2006,6 +2090,8 @@ impl RequestContext {
                         "enabled_tools",
                         "enabled_mcp_servers",
                         "inject_todo_instructions",
+                        "inject_skill_instructions",
+                        "skill_instructions",
                         "max_auto_continues",
                         "save_session",
                         "compression_threshold",
@@ -2172,6 +2258,11 @@ impl RequestContext {
                     super::complete_bool(config.inject_instructions)
                 }
                 "continuation_prompt" => vec!["null".to_string()],
+                "inject_skill_instructions" => {
+                    let config = self.skill_instructions_config();
+                    super::complete_bool(config.inject)
+                }
+                "skill_instructions" => vec!["null".to_string()],
                 _ => vec![],
             };
             values = candidates.into_iter().map(|v| (v, None)).collect();
@@ -3123,6 +3214,108 @@ mod tests {
         assert_eq!(extracted.name(), "");
     }
 
+    #[test]
+    fn should_inject_skill_instructions_requires_function_calling() {
+        let app = AppConfig {
+            function_calling_support: false,
+            ..AppConfig::default()
+        };
+
+        let policy = SkillPolicy {
+            skills_enabled: true,
+            enabled: ["a".to_string()].into_iter().collect(),
+            compatible_enabled: ["a".to_string()].into_iter().collect(),
+        };
+
+        assert!(!should_inject_skill_instructions(&app, &policy));
+    }
+
+    #[test]
+    fn should_inject_skill_instructions_requires_skills_enabled() {
+        let app = AppConfig {
+            function_calling_support: true,
+            ..AppConfig::default()
+        };
+
+        let policy = SkillPolicy {
+            skills_enabled: false,
+            enabled: ["a".to_string()].into_iter().collect(),
+            compatible_enabled: ["a".to_string()].into_iter().collect(),
+        };
+
+        assert!(!should_inject_skill_instructions(&app, &policy));
+    }
+
+    #[test]
+    fn should_inject_skill_instructions_suppresses_when_no_compatible_skills() {
+        let app = AppConfig {
+            function_calling_support: true,
+            ..AppConfig::default()
+        };
+
+        // `enabled` has names, but none survive the compatibility filter — hint must suppress.
+        let policy = SkillPolicy {
+            skills_enabled: true,
+            enabled: ["a".to_string()].into_iter().collect(),
+            compatible_enabled: Default::default(),
+        };
+
+        assert!(!should_inject_skill_instructions(&app, &policy));
+    }
+
+    #[test]
+    fn should_inject_skill_instructions_when_all_conditions_met() {
+        let app = AppConfig {
+            function_calling_support: true,
+            ..AppConfig::default()
+        };
+
+        let policy = SkillPolicy {
+            skills_enabled: true,
+            enabled: ["a".to_string()].into_iter().collect(),
+            compatible_enabled: ["a".to_string()].into_iter().collect(),
+        };
+
+        assert!(should_inject_skill_instructions(&app, &policy));
+    }
+
+    #[test]
+    fn skill_instructions_config_falls_back_to_app_default() {
+        let ctx = create_test_ctx();
+
+        let cfg = ctx.skill_instructions_config();
+
+        assert!(cfg.inject);
+        assert!(cfg.instructions.is_none());
+    }
+
+    #[test]
+    fn skill_instructions_config_respects_role_disable() {
+        let mut ctx = create_test_ctx();
+        let role = Role::new("r", "---\ninject_skill_instructions: false\n---\nhello");
+        ctx.use_role_obj(role).unwrap();
+
+        let cfg = ctx.skill_instructions_config();
+
+        assert!(!cfg.inject);
+    }
+
+    #[test]
+    fn skill_instructions_config_session_overrides_role() {
+        let mut ctx = create_test_ctx();
+        let role = Role::new("r", "---\ninject_skill_instructions: false\n---\nhello");
+        ctx.use_role_obj(role).unwrap();
+        let mut session = Session::default();
+        session.set_inject_skill_instructions(Some(true));
+        session.set_skill_instructions(Some("custom hint".into()));
+        ctx.session = Some(session);
+
+        let cfg = ctx.skill_instructions_config();
+
+        assert!(cfg.inject);
+        assert_eq!(cfg.instructions.as_deref(), Some("custom hint"));
+    }
+
     #[test]
     fn exit_session_clears_session() {
         let mut ctx = create_test_ctx();

src/config/role.rs

@@ -79,6 +79,10 @@ pub struct Role {
     inject_todo_instructions: Option<bool>,
     #[serde(skip_serializing_if = "Option::is_none")]
     continuation_prompt: Option<String>,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    inject_skill_instructions: Option<bool>,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    skill_instructions: Option<String>,
 
     #[serde(skip)]
     model: Model,
@@ -124,6 +128,10 @@ impl Role {
                     "continuation_prompt" => {
                         role.continuation_prompt = value.as_str().map(|v| v.to_string())
                     }
+                    "inject_skill_instructions" => role.inject_skill_instructions = value.as_bool(),
+                    "skill_instructions" => {
+                        role.skill_instructions = value.as_str().map(|v| v.to_string())
+                    }
                     _ => (),
                 }
             }
@@ -189,6 +197,14 @@ impl Role {
         if let Some(continuation_prompt) = &self.continuation_prompt {
             metadata.push(format!("continuation_prompt: {continuation_prompt}"));
         }
+        if let Some(inject_skill_instructions) = self.inject_skill_instructions {
+            metadata.push(format!(
+                "inject_skill_instructions: {inject_skill_instructions}"
+            ));
+        }
+        if let Some(skill_instructions) = &self.skill_instructions {
+            metadata.push(format!("skill_instructions: {skill_instructions}"));
+        }
         if metadata.is_empty() {
             format!("{}\n", self.prompt)
         } else if self.prompt.is_empty() {
@@ -299,6 +315,14 @@ impl Role {
         self.continuation_prompt.as_deref()
     }
 
+    pub fn inject_skill_instructions(&self) -> Option<bool> {
+        self.inject_skill_instructions
+    }
+
+    pub fn skill_instructions(&self) -> Option<&str> {
+        self.skill_instructions.as_deref()
+    }
+
     pub fn skills_enabled(&self) -> Option<bool> {
         self.skills_enabled
     }

src/config/session.rs

@@ -56,6 +56,10 @@ pub struct Session {
     inject_todo_instructions: Option<bool>,
     #[serde(skip_serializing_if = "Option::is_none")]
     continuation_prompt: Option<String>,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    inject_skill_instructions: Option<bool>,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    skill_instructions: Option<String>,
 
     #[serde(skip_serializing_if = "Option::is_none")]
     role_name: Option<String>,
@@ -227,6 +231,12 @@ impl Session {
         if let Some(continuation_prompt) = self.continuation_prompt() {
             data["continuation_prompt"] = continuation_prompt.into();
         }
+        if let Some(inject_skill_instructions) = self.inject_skill_instructions() {
+            data["inject_skill_instructions"] = inject_skill_instructions.into();
+        }
+        if let Some(skill_instructions) = self.skill_instructions() {
+            data["skill_instructions"] = skill_instructions.into();
+        }
         let (tokens, percent) = self.tokens_usage();
         data["total_tokens"] = tokens.into();
         if let Some(max_input_tokens) = self.model().max_input_tokens() {
@@ -305,6 +315,15 @@ impl Session {
         if let Some(continuation_prompt) = self.continuation_prompt() {
             items.push(("continuation_prompt", continuation_prompt.to_string()));
         }
+        if let Some(inject_skill_instructions) = self.inject_skill_instructions() {
+            items.push((
+                "inject_skill_instructions",
+                inject_skill_instructions.to_string(),
+            ));
+        }
+        if let Some(skill_instructions) = self.skill_instructions() {
+            items.push(("skill_instructions", skill_instructions.to_string()));
+        }
 
         if let Some(max_input_tokens) = self.model().max_input_tokens() {
             items.push(("max_input_tokens", max_input_tokens.to_string()));
@@ -446,6 +465,14 @@ impl Session {
         self.continuation_prompt.as_deref()
     }
 
+    pub fn inject_skill_instructions(&self) -> Option<bool> {
+        self.inject_skill_instructions
+    }
+
+    pub fn skill_instructions(&self) -> Option<&str> {
+        self.skill_instructions.as_deref()
+    }
+
     pub fn set_inject_todo_instructions(&mut self, value: Option<bool>) {
         if self.inject_todo_instructions != value {
             self.inject_todo_instructions = value;
@@ -460,6 +487,20 @@ impl Session {
         }
     }
 
+    pub fn set_inject_skill_instructions(&mut self, value: Option<bool>) {
+        if self.inject_skill_instructions != value {
+            self.inject_skill_instructions = value;
+            self.dirty = true;
+        }
+    }
+
+    pub fn set_skill_instructions(&mut self, value: Option<String>) {
+        if self.skill_instructions != value {
+            self.skill_instructions = value;
+            self.dirty = true;
+        }
+    }
+
     pub fn needs_compression(&self, global_compression_threshold: usize) -> bool {
         if self.compressing {
             return false;

src/config/skill_policy.rs

@@ -3,14 +3,16 @@ use super::app_config::AppConfig;
 use super::paths;
 use super::role::Role;
 use super::session::Session;
+use super::skill::Skill;
 
 use anyhow::{Result, anyhow, bail};
-use std::collections::HashSet;
+use std::collections::{BTreeSet, HashSet};
 
 #[derive(Debug)]
 pub struct SkillPolicy {
     pub skills_enabled: bool,
     pub enabled: HashSet<String>,
+    pub compatible_enabled: BTreeSet<String>,
 }
 
 impl SkillPolicy {
@@ -27,20 +29,27 @@ impl SkillPolicy {
             session,
             &paths::has_skill,
             &paths::list_skills,
+            &|name, mcp_on| {
+                Skill::load(name)
+                    .map(|s| s.is_compatible(mcp_on))
+                    .unwrap_or(false)
+            },
         )
     }
 
-    fn effective_with<F, G>(
+    fn effective_with<F, G, H>(
         global: &AppConfig,
         role: Option<&Role>,
         agent: Option<&Agent>,
         session: Option<&Session>,
         skill_exists: &F,
         list_installed: &G,
+        skill_is_compatible: &H,
     ) -> Result<Self>
     where
         F: Fn(&str) -> bool,
         G: Fn() -> Vec<String>,
+        H: Fn(&str, bool) -> bool,
     {
         let mut skills_enabled = global.skills_enabled;
         if let Some(r) = role
@@ -104,9 +113,21 @@ impl SkillPolicy {
             },
         };
 
+        let compatible_enabled: BTreeSet<String> = if skills_enabled {
+            let mcp_on = global.mcp_server_support;
+            enabled
+                .iter()
+                .filter(|name| skill_is_compatible(name, mcp_on))
+                .cloned()
+                .collect()
+        } else {
+            BTreeSet::new()
+        };
+
         Ok(Self {
             skills_enabled,
             enabled,
+            compatible_enabled,
         })
     }
 
@@ -128,6 +149,10 @@ mod tests {
         Vec::new()
     }
 
+    fn all_compatible(_: &str, _: bool) -> bool {
+        true
+    }
+
     fn make_app_config(
         skills_enabled: bool,
         enabled: Option<&str>,
@@ -145,9 +170,16 @@ mod tests {
     fn defaults_yield_skills_enabled_with_empty_universe() {
         let global = AppConfig::default();
 
-        let policy =
-            SkillPolicy::effective_with(&global, None, None, None, &always_true, &empty_installed)
-                .unwrap();
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &all_compatible,
+        )
+        .unwrap();
 
         assert!(policy.skills_enabled);
         assert!(policy.enabled.is_empty());
@@ -158,9 +190,16 @@ mod tests {
         let global = AppConfig::default();
         let installed = || vec!["alpha".to_string(), "beta".to_string()];
 
-        let policy =
-            SkillPolicy::effective_with(&global, None, None, None, &always_true, &installed)
-                .unwrap();
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &installed,
+            &all_compatible,
+        )
+        .unwrap();
 
         assert_eq!(policy.enabled.len(), 2);
         assert!(policy.enabled.contains("alpha"));
@@ -171,9 +210,16 @@ mod tests {
     fn falls_back_to_visible_when_visible_set_but_no_enabled() {
         let global = make_app_config(true, None, Some(&["alpha", "beta"]));
 
-        let policy =
-            SkillPolicy::effective_with(&global, None, None, None, &always_true, &empty_installed)
-                .unwrap();
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &all_compatible,
+        )
+        .unwrap();
 
         assert_eq!(policy.enabled.len(), 2);
         assert!(policy.enabled.contains("alpha"));
@@ -184,9 +230,16 @@ mod tests {
     fn global_enabled_skills_is_effective_when_no_other_levels() {
         let global = make_app_config(true, Some("alpha,beta"), Some(&["alpha", "beta", "gamma"]));
 
-        let policy =
-            SkillPolicy::effective_with(&global, None, None, None, &always_true, &empty_installed)
-                .unwrap();
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &all_compatible,
+        )
+        .unwrap();
 
         assert!(policy.enabled.contains("alpha"));
         assert!(policy.enabled.contains("beta"));
@@ -205,6 +258,7 @@ mod tests {
             None,
             &always_true,
             &empty_installed,
+            &all_compatible,
         )
         .unwrap();
 
@@ -224,6 +278,7 @@ mod tests {
             None,
             &always_true,
             &empty_installed,
+            &all_compatible,
         )
         .unwrap();
 
@@ -237,9 +292,15 @@ mod tests {
             ..AppConfig::default()
         };
 
-        let policy = SkillPolicy::effective_with(&global, None, None, None, &always_true, &|| {
-            vec!["alpha".to_string()]
-        })
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &|| vec!["alpha".to_string()],
+            &all_compatible,
+        )
         .unwrap();
 
         assert!(!policy.allows("alpha"));
@@ -249,9 +310,16 @@ mod tests {
     fn allows_returns_true_when_skill_in_enabled_set() {
         let global = make_app_config(true, Some("alpha"), None);
 
-        let policy =
-            SkillPolicy::effective_with(&global, None, None, None, &always_true, &empty_installed)
-                .unwrap();
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &all_compatible,
+        )
+        .unwrap();
 
         assert!(policy.allows("alpha"));
         assert!(!policy.allows("beta"));
@@ -261,9 +329,16 @@ mod tests {
     fn validation_rejects_uninstalled_skill_reference() {
         let global = make_app_config(true, Some("ghost"), None);
 
-        let err =
-            SkillPolicy::effective_with(&global, None, None, None, &|_| false, &empty_installed)
-                .unwrap_err();
+        let err = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &|_| false,
+            &empty_installed,
+            &all_compatible,
+        )
+        .unwrap_err();
 
         assert!(err.to_string().contains("not installed"));
         assert!(err.to_string().contains("ghost"));
@@ -273,9 +348,16 @@ mod tests {
     fn validation_rejects_skill_not_in_visible_set() {
         let global = make_app_config(true, Some("beta"), Some(&["alpha"]));
 
-        let err =
-            SkillPolicy::effective_with(&global, None, None, None, &always_true, &empty_installed)
-                .unwrap_err();
+        let err = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &all_compatible,
+        )
+        .unwrap_err();
 
         assert!(
             err.to_string()
@@ -288,9 +370,16 @@ mod tests {
     fn validation_skipped_when_no_explicit_enabled_skills() {
         let global = make_app_config(true, None, None);
 
-        let policy =
-            SkillPolicy::effective_with(&global, None, None, None, &|_| false, &empty_installed)
-                .unwrap();
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &|_| false,
+            &empty_installed,
+            &all_compatible,
+        )
+        .unwrap();
 
         assert!(policy.enabled.is_empty());
     }
@@ -307,9 +396,142 @@ mod tests {
             None,
             &always_true,
             &empty_installed,
+            &all_compatible,
         )
         .unwrap();
 
         assert!(policy.enabled.is_empty());
     }
+
+    #[test]
+    fn compatible_enabled_is_empty_when_skills_disabled() {
+        let global = AppConfig {
+            skills_enabled: false,
+            enabled_skills: Some(vec!["alpha".into()]),
+            visible_skills: Some(vec!["alpha".into()]),
+            ..AppConfig::default()
+        };
+
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &all_compatible,
+        )
+        .unwrap();
+
+        assert!(!policy.skills_enabled);
+        assert!(policy.compatible_enabled.is_empty());
+    }
+
+    #[test]
+    fn compatible_enabled_short_circuits_callback_when_skills_disabled() {
+        use std::cell::Cell;
+        let global = AppConfig {
+            skills_enabled: false,
+            enabled_skills: Some(vec!["alpha".into()]),
+            visible_skills: Some(vec!["alpha".into()]),
+            ..AppConfig::default()
+        };
+        let invoked = Cell::new(0u32);
+        let counting = |_: &str, _: bool| {
+            invoked.set(invoked.get() + 1);
+            true
+        };
+
+        SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &counting,
+        )
+        .unwrap();
+
+        assert_eq!(
+            invoked.get(),
+            0,
+            "skill_is_compatible callback must not run when skills are disabled"
+        );
+    }
+
+    #[test]
+    fn compatible_enabled_includes_all_when_callback_passes() {
+        let global = make_app_config(true, Some("alpha,beta"), Some(&["alpha", "beta"]));
+
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &all_compatible,
+        )
+        .unwrap();
+
+        assert_eq!(policy.compatible_enabled.len(), 2);
+        assert!(policy.compatible_enabled.contains("alpha"));
+        assert!(policy.compatible_enabled.contains("beta"));
+    }
+
+    #[test]
+    fn compatible_enabled_excludes_incompatible_skills() {
+        let global = make_app_config(true, Some("alpha,beta"), Some(&["alpha", "beta"]));
+        let only_alpha_compat = |name: &str, _: bool| name == "alpha";
+
+        let policy = SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &only_alpha_compat,
+        )
+        .unwrap();
+
+        assert!(policy.compatible_enabled.contains("alpha"));
+        assert!(!policy.compatible_enabled.contains("beta"));
+        assert_eq!(policy.compatible_enabled.len(), 1);
+    }
+
+    #[test]
+    fn compatible_enabled_passes_mcp_flag_to_callback() {
+        use std::cell::Cell;
+        let global = AppConfig {
+            skills_enabled: true,
+            mcp_server_support: false,
+            enabled_skills: Some(vec!["alpha".into()]),
+            visible_skills: Some(vec!["alpha".into()]),
+            ..AppConfig::default()
+        };
+        let observed_mcp = Cell::new(None::<bool>);
+        let capture = |_: &str, mcp_on: bool| {
+            observed_mcp.set(Some(mcp_on));
+            true
+        };
+
+        SkillPolicy::effective_with(
+            &global,
+            None,
+            None,
+            None,
+            &always_true,
+            &empty_installed,
+            &capture,
+        )
+        .unwrap();
+
+        assert_eq!(
+            observed_mcp.get(),
+            Some(false),
+            "callback must receive mcp_server_support flag from AppConfig"
+        );
+    }
 }

src/config/skill_registry.rs

@@ -116,6 +116,7 @@ impl SkillRegistry {
         let policy = SkillPolicy {
             skills_enabled: true,
             enabled: self.loaded.keys().cloned().collect(),
+            compatible_enabled: self.loaded.keys().cloned().collect(),
         };
         self.effective_role(base, &policy)
     }

src/function/skill.rs

@@ -14,9 +14,11 @@ pub fn skill_function_declarations() -> Vec<FunctionDeclaration> {
         FunctionDeclaration {
             name: format!("{SKILL_FUNCTION_PREFIX}list"),
             description:
-                "List skills available in this context. Returns each skill's name, description, \
-                 what tools and MCP servers it grants on load, and whether it is currently loaded. \
-                 Call this to discover skills before using skill__load."
+                "List skills available in this context. Call this early in any non-trivial task to \
+                 discover specialized skills that may apply to the work before deciding on an \
+                 approach. Returns each skill's name, description, what tools and MCP servers it \
+                 grants on load, and whether it is currently loaded. Pair with `skill__load` to \
+                 activate the skills you choose."
                     .to_string(),
             parameters: JsonSchema {
                 type_value: Some("object".to_string()),
@@ -28,9 +30,10 @@ pub fn skill_function_declarations() -> Vec<FunctionDeclaration> {
         FunctionDeclaration {
             name: format!("{SKILL_FUNCTION_PREFIX}load"),
             description:
-                "Load a skill module into the current context. The skill's instructions and any \
-                 tools or MCP servers it grants become active for subsequent turns. Call \
-                 skill__unload when the skill's work is complete to keep the context lean."
+                "Load a skill module into the current context after confirming via `skill__list` \
+                 that it applies to the task at hand. The skill's instructions and any tools or \
+                 MCP servers it grants become active for subsequent turns. Call `skill__unload` \
+                 when the skill's work is complete to keep the context lean."
                     .to_string(),
             parameters: JsonSchema {
                 type_value: Some("object".to_string()),
@@ -102,8 +105,6 @@ pub async fn handle_skill_tool(
 }
 
 fn handle_list(ctx: &RequestContext, policy: &SkillPolicy) -> Result<Value> {
-    let mcp_on = ctx.app.config.mcp_server_support;
-
     let visible_names: Vec<String> = match ctx.app.config.visible_skills.as_deref() {
         Some(list) => list.to_vec(),
         None => paths::list_skills(),
@@ -111,7 +112,7 @@ fn handle_list(ctx: &RequestContext, policy: &SkillPolicy) -> Result<Value> {
 
     let mut entries = Vec::new();
     for name in visible_names {
-        if !policy.allows(&name) {
+        if !policy.compatible_enabled.contains(&name) {
             continue;
         }
 
@@ -122,12 +123,6 @@ fn handle_list(ctx: &RequestContext, policy: &SkillPolicy) -> Result<Value> {
                 continue;
             }
         };
-        if !skill.is_compatible(mcp_on) {
-            warn!(
-                "Skill '{name}' filtered from list: declares MCP servers but MCP support is disabled"
-            );
-            continue;
-        }
 
         entries.push(json!({
             "name": skill.name(),

src/graph/llm.rs

@@ -2,7 +2,10 @@ use super::state::StateManager;
 use super::structured;
 use super::types::LlmNode;
 use crate::client::{Model, ModelType, call_chat_completions};
-use crate::config::{Input, RequestContext, Role, RoleLike, SkillPolicy};
+use crate::config::prompts::DEFAULT_SKILL_INSTRUCTIONS;
+use crate::config::{
+    Input, RequestContext, Role, RoleLike, SkillPolicy, should_inject_skill_instructions,
+};
 use crate::function::skill::skill_function_declarations;
 use crate::utils::create_abort_signal;
 use anyhow::{Context, Error, Result, anyhow, bail};
@@ -139,6 +142,31 @@ async fn run(
         role.set_enabled_tools(Some(tools));
     }
 
+    if should_inject_skill_instructions(&parent_ctx.app.config, &policy) {
+        let app = &parent_ctx.app.config;
+        let agent = parent_ctx.agent.as_ref();
+        let inject = node
+            .inject_skill_instructions
+            .or_else(|| agent.map(|a| a.inject_skill_instructions()))
+            .unwrap_or(app.inject_skill_instructions);
+
+        if inject {
+            let instructions = node
+                .skill_instructions
+                .clone()
+                .or_else(|| agent.and_then(|a| a.skill_instructions_value()))
+                .or_else(|| app.skill_instructions.clone());
+            let separator = if role.is_empty_prompt() { "" } else { "\n\n" };
+
+            role.append_to_prompt(separator);
+            role.append_to_prompt(
+                instructions
+                    .as_deref()
+                    .unwrap_or(DEFAULT_SKILL_INSTRUCTIONS),
+            );
+        }
+    }
+
     let composed_role = parent_ctx.skill_registry.effective_role(&role, &policy);
 
     let saved_role = parent_ctx.role.clone();
@@ -456,6 +484,8 @@ mod tests {
             timeout: None,
             skills_enabled: None,
             enabled_skills: None,
+            inject_skill_instructions: None,
+            skill_instructions: None,
         }
     }
 

src/graph/types.rs

@@ -37,6 +37,12 @@ pub struct Graph {
     #[serde(default, skip_serializing_if = "Option::is_none")]
     pub enabled_skills: Option<Vec<String>>,
 
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub inject_skill_instructions: Option<bool>,
+
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub skill_instructions: Option<String>,
+
     #[serde(default)]
     pub conversation_starters: Vec<String>,
 
@@ -305,6 +311,12 @@ pub struct LlmNode {
 
     #[serde(default, skip_serializing_if = "Option::is_none")]
     pub enabled_skills: Option<Vec<String>>,
+
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub inject_skill_instructions: Option<bool>,
+
+    #[serde(default, skip_serializing_if = "Option::is_none")]
+    pub skill_instructions: Option<String>,
 }
 
 fn default_llm_max_attempts() -> u32 {

src/graph/validator.rs

@@ -950,6 +950,8 @@ mod tests {
             mcp_servers: Vec::new(),
             skills_enabled: None,
             enabled_skills: None,
+            inject_skill_instructions: None,
+            skill_instructions: None,
             conversation_starters: Vec::new(),
             variables: Vec::new(),
             settings: GraphSettings::default(),
@@ -1051,6 +1053,8 @@ mod tests {
                 timeout: None,
                 skills_enabled: None,
                 enabled_skills: None,
+                inject_skill_instructions: None,
+                skill_instructions: None,
             }),
             next: next.map(NextTargets::from),
         }